View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20226_high_16 (Length: 380)
Name: NF20226_high_16
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 365
Target Start/End: Complemental strand, 40078504 - 40078186
Alignment:
| Q |
29 |
aatacttataaatttgacatagttccaaaaataaagatcaaaataatacatcaaaatttgggggaccattgacgaatgttgtcatattttgaagaccaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40078504 |
aatacttataaatttgacatagttccaaaaataaagatcaaaataatacatcaaaatttgggggaccattgacgaatgttgtcatattttgaagaccaaa |
40078405 |
T |
|
| Q |
129 |
atatacttttatctttttcaaaattcaacaagaaattttcaataaaatgcatgatatatactccttgcatgatataaagcttggtagtgcactatattat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40078404 |
atatacttttatctttttcaaaattcaacaagaaattttcaataaaatgcatgata------------------taaagcttggtagtgcactatattat |
40078323 |
T |
|
| Q |
229 |
tttttgacaaattatattgcatacaattaatggaaattattatatatagtagcaataataatatagtgtaattagttaagttttttccttgccatatatt |
328 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40078322 |
tttttgacaaattatattgcatataattaatggaaattattatatatagtagcaataataatatagtgtaattagttaagttttttccttgccatatatt |
40078223 |
T |
|
| Q |
329 |
atttacttacaataatctcagcaacaactctgggttg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40078222 |
atttacttacaataatctcagcaacaactctgggttg |
40078186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 40078536 - 40078504
Alignment:
| Q |
8 |
tgagaagaatcaatcagaaataatacttataaa |
40 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
40078536 |
tgagaagaatcaataagaaataatacttataaa |
40078504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University