View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_2 (Length: 563)
Name: NF20226_high_2
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_2 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 546
Target Start/End: Original strand, 655276 - 655810
Alignment:
| Q |
11 |
aagaaaatagctcatctttaccacgacctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaat |
110 |
Q |
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| T |
655276 |
aagaaaatagctcatctttcccaa-atctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaat |
655374 |
T |
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| Q |
111 |
caaatcatcaacgtaaagactgacaattaggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcga |
210 |
Q |
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| T |
655375 |
caaatcatcaacgtaaagactgacaattaggattttacctctctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcga |
655474 |
T |
|
| Q |
211 |
acgaagtaggattctatgcgactggaccatgctcgcggagcctgtttcagtccgtctgaagctttatttagcttatataccttttcttcttctcccttct |
310 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
655475 |
acgaagtaggattctatgcgactgtaccatgctcgcggagcctgtttcagtccgtataaagctttatttagcttatataccttttcttcttctcccttct |
655574 |
T |
|
| Q |
311 |
tctcaaagccagtaggttgttgtacatacacctcttccttaagttctccttgaaggaatgcactcttgacatctaactggtatacttcccacttgttttg |
410 |
Q |
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| T |
655575 |
tctcaaagccagtaggttgttgtacatacacatcttccttaagttctccttgaaggaatgcactcttgacatctaactggtatacttcccacttgttttg |
655674 |
T |
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| Q |
411 |
agctgcagttgccaggataagtcttattgtatcaagacgagccaccggagcaaacacctatgtgtagtcaatcccatattgttgcgcatatcctttggcc |
510 |
Q |
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| T |
655675 |
agctgcagttgccaggataagtcttattgtatcaagacaagccaccggagcaaacacctctgtgtagtcaatcccatattgttgcgcatatcctttggcc |
655774 |
T |
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| Q |
511 |
accaacctagctttgtacttctctacattaccatgt |
546 |
Q |
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| T |
655775 |
accaacctagctttgtacttctctacattaccatgt |
655810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 14247031 - 14246936
Alignment:
| Q |
57 |
catcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
152 |
Q |
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| T |
14247031 |
catcattgagtttttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
14246936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 11850614 - 11850427
Alignment:
| Q |
40 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
139 |
Q |
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| T |
11850614 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcccggtatatattaaatcatctacataaagacttactatta |
11850515 |
T |
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| Q |
140 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
227 |
Q |
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| T |
11850514 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
11850427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 5877310 - 5877123
Alignment:
| Q |
40 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
139 |
Q |
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| T |
5877310 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcctggtatatattaaatcatctacataaacacttactatta |
5877211 |
T |
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| Q |
140 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
227 |
Q |
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| T |
5877210 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
5877123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 964 - 1046
Alignment:
| Q |
70 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
152 |
Q |
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| T |
964 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
1046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 6408 - 6490
Alignment:
| Q |
70 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
152 |
Q |
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| T |
6408 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
6490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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