View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_20 (Length: 366)
Name: NF20226_high_20
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 28690697 - 28690354
Alignment:
| Q |
8 |
tccaagaatatgggttcaacttgagcttaggttggctgctattttgggggaaaaagggtccaagttcctctgcttctccatagccaattgaagaacagcc |
107 |
Q |
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| T |
28690697 |
tccaagaatatgggttcaacttgagcttaggttggctgctattttgggggaaaaagggtccaagttcctctgcttctccatagccaattgaagaacaacc |
28690598 |
T |
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| Q |
108 |
agggcctgaaacattaatacatatttactataatgcacatttatgtcacacttagacctatttatcaattcatattcctaattgtatatttttgtttctc |
207 |
Q |
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| T |
28690597 |
agggcctgaaacattaatacatatttactataatgcacatttatgtcacactcagacctagttatcaattcgtattgctaattgtatatttttgtttctc |
28690498 |
T |
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| Q |
208 |
atgcaatgactatttaggctttacaaagtacttttata--nnnnnnnnattagttattggtctattgaccaaccaatattcaaagaaacacacacgaaca |
305 |
Q |
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| T |
28690497 |
atgcaatcactatttaggctttacaaagtacttttatattttttttttattagttattggtctattgaccaaccaatattcaaagaaacacacacgaaca |
28690398 |
T |
|
| Q |
306 |
ggaaatgtggtgaccggattcaaaccaagaattctacatagaat |
349 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28690397 |
ggaaatgtggtgaccggattcaaaccaaaaattctacatagaat |
28690354 |
T |
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