View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_22 (Length: 348)
Name: NF20226_high_22
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 45244864 - 45244548
Alignment:
| Q |
18 |
acccagtgcatacacataggcgctccacaaccaacacggaaatacagcagaaaacaccagaaatccgaaccacatagcagataaaaacagcaccgaacaa |
117 |
Q |
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| T |
45244864 |
acccagtgcatacacataggcgctccacagccaacacggaaatacagcagaaaacaccagaagtccgaaccacatagcagataaaaacagcaccgaacaa |
45244765 |
T |
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| Q |
118 |
cagaccaaaacagcctctgcaggtgccaaaactgcagccagcagcacaggcctgcgcaaccagatcaaaacagcggcacaacacgcctcaaaacagcccc |
217 |
Q |
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| T |
45244764 |
cagaccaaaacagcctctgcaggtgccaaaactgcagccagcagcacaggc-tgcgcaaccagatcaaaacagcggcacaacacgcctcaaaacagcccc |
45244666 |
T |
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| Q |
218 |
tcgtcgagcaccccaaccacactacctcaaaaggcactccctcggatttcaactccactcatagaataggcaagatgccactttttgcttgcttaaaacc |
317 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45244665 |
tcgtcgagcaccccaactacactacctcaaaaggcactccctcggatttcaattccactcatagaataggcaagatgccactttttgcttgcttaaaacc |
45244566 |
T |
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| Q |
318 |
caatgcacgacatcacct |
335 |
Q |
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|||||||||||||||||| |
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| T |
45244565 |
caatgcacgacatcacct |
45244548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 232
Target Start/End: Complemental strand, 18466894 - 18466738
Alignment:
| Q |
67 |
gaaaacaccagaaatccgaaccacatagcagataaaaacagcaccgaacaa-cagaccaaaacagcctctgcaggtgcc-aaaactgcagccagcagcac |
164 |
Q |
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| T |
18466894 |
gaaaacagcagaaacccgaacaaaagagcagaaaaaaacgacaccgaacaaacaggccaaaacagcctctgcaggtgccaaaaaaagcagccagcagcac |
18466795 |
T |
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| Q |
165 |
aggcctgcgcaaccagatcaaaacagcggcacaacacgcctcaaaacagcccctcgtcgagcacccca |
232 |
Q |
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|||||| | |||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
18466794 |
aggcct-----------tgcaaacagtcgcacaacacgcctcaaaacagcctctcgtcgagcacccca |
18466738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 28915118 - 28915237
Alignment:
| Q |
145 |
aaaactgcagccagcagcacaggcctgcgcaaccagatcaaaacagcggcacaacacgcctcaaaacagcccctcgtcgagcaccccaaccacactacct |
244 |
Q |
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|||||||||||||||||||||||| ||||||| || ||||||||||| |||||||| ||| | ||||||||||||||||||||| | |||||||||||| |
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| T |
28915118 |
aaaactgcagccagcagcacaggcatgcgcaaacaaatcaaaacagcagcacaacaaacctaagaacagcccctcgtcgagcacctcgaccacactacct |
28915217 |
T |
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| Q |
245 |
caaaaggcactccctcggat |
264 |
Q |
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| T |
28915218 |
ccaaaggcactccctcggat |
28915237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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