View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_27 (Length: 318)
Name: NF20226_high_27
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 38382921 - 38383211
Alignment:
| Q |
13 |
aatattgctttgaataatcgcagtaagtatgtcacagaccaaagctgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagg |
112 |
Q |
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| T |
38382921 |
aatattgctttgaataatcgcggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagg |
38383020 |
T |
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| Q |
113 |
agtgaagcgattgttccaaatgtacttagactgtgagttaacattgccaccaagattcctatgccgccatctattttttgaatggcttcaacttttccag |
212 |
Q |
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| T |
38383021 |
agtgaagcgattgttccaaatgtacttagactgtgagttaacattgccaccaagattccattgccgccatctattttttgaatggcttcaacttttccag |
38383120 |
T |
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| Q |
213 |
gcaatgttagtaatggtataaacaaaacacataatggtacagaaaatccaattattgaaattatccatgctttctttcctgtccttgttat |
303 |
Q |
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| T |
38383121 |
gcaatgttagtaatggtataaacaaaacacataatggtacagaaaatccaattattgaaattatccatgctttctttcctgtccttgttat |
38383211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 38 - 303
Target Start/End: Original strand, 38391804 - 38392069
Alignment:
| Q |
38 |
agtatgtcacagaccaaagctgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcgattgttccaaatgtac |
137 |
Q |
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| T |
38391804 |
agtatgtcacagaccaaagccgaggacaaagttaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagagattgttgaaaattgac |
38391903 |
T |
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| Q |
138 |
ttagactgtgagttaacattgccaccaagattcctatgccgccatctattttttgaatggcttcaacttttccaggcaatgttagtaatggtataaacaa |
237 |
Q |
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| T |
38391904 |
ttagactgtgagataacattgccaccatgactccattgccgccatgtaatttttgaatggcttgaactatcccaggcaatgttagtagtggtataaaacc |
38392003 |
T |
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| Q |
238 |
aacacataatggtacagaaaatccaattattgaaattatccatgctttctttcctgtccttgttat |
303 |
Q |
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| T |
38392004 |
aacacataatggtacagataatccaattattgaaattatccatgctctctttcctgtccttgttat |
38392069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 38 - 303
Target Start/End: Original strand, 38400393 - 38400658
Alignment:
| Q |
38 |
agtatgtcacagaccaaagctgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcgattgttccaaatgtac |
137 |
Q |
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| T |
38400393 |
agtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgattgttgaaaattgac |
38400492 |
T |
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| Q |
138 |
ttagactgtgagttaacattgccaccaagattcctatgccgccatctattttttgaatggcttcaacttttccaggcaatgttagtaatggtataaacaa |
237 |
Q |
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| T |
38400493 |
ttagactgtgagataacgttgccactatgattccaccgccgccgtgtactttttgaatggcttcgattcttccaggcaatgttagaagtggtaaaaacaa |
38400592 |
T |
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| Q |
238 |
aacacataatggtacagaaaatccaattattgaaattatccatgctttctttcctgtccttgttat |
303 |
Q |
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| T |
38400593 |
aacacataatggtacacataatccaattattgaaattatccatgctttctttcctgtcctcgttat |
38400658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 37839686 - 37839426
Alignment:
| Q |
40 |
tatgtcacagaccaaagctgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcgattgttccaaatgtactt |
139 |
Q |
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|||||||| ||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| ||||| |||| |
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| T |
37839686 |
tatgtcactgaccaaagccgaggataaagacaatctaccaagctcagagttttgaatttgaagttcacttagtagtgaagcaattgttgcaaattgactt |
37839587 |
T |
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| Q |
140 |
agactgtgagttaacattgccaccaagattcctatgccgccatctattttttgaatggcttcaacttttccaggcaatgttagtaatggtataaacaaaa |
239 |
Q |
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|||||||| ||||||| || ||| |||||| || | |||| ||||| ||||| ||||| | | |||||||||||||||||| ||||||||| || |
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| T |
37839586 |
agactgtgtgttaacactgtcactgcgattcc-at--caccatgcattttatgaattgcttcgattcttccaggcaatgttagtagtggtataaaaccaa |
37839490 |
T |
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| Q |
240 |
cacataatggtacagaaaatccaattattgaaattatccatgctttctttcctgtccttgttat |
303 |
Q |
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| T |
37839489 |
cacataatggtacaaataatccaattattgaaattatccatgctctctttcctgtccttgttat |
37839426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 37845267 - 37845165
Alignment:
| Q |
49 |
gaccaaagctgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcgattgttccaaatgtacttagactgtga |
148 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
37845267 |
gaccaaagccgatgacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcaattgttgcaaattgacttagactgtga |
37845168 |
T |
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| Q |
149 |
gtt |
151 |
Q |
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||| |
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| T |
37845167 |
gtt |
37845165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 37845074 - 37845028
Alignment:
| Q |
257 |
aatccaattattgaaattatccatgctttctttcctgtccttgttat |
303 |
Q |
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| T |
37845074 |
aatccaattattgaaattatccatgctctctttcccgtccttattat |
37845028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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