View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_28 (Length: 309)
Name: NF20226_high_28
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 4 - 293
Target Start/End: Complemental strand, 4651230 - 4650941
Alignment:
| Q |
4 |
atgagcagagtattaaaatttcaattaaaactactagctttggtgagatttagtaggcaaacaacggaacaccgatacttcacagtgaagacatgtctac |
103 |
Q |
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| T |
4651230 |
atgagcagagtattaaaatttcaattaaaactactagctttggtgagatttagtaggcaaacaacggaacaccgatacttcacagtgaagacatgtttac |
4651131 |
T |
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| Q |
104 |
tgcccgacatttgttgatatccaacaacaccatgacattgacacgcatactaaattacacttaatcacttccactttctctaattattactggtgtggtg |
203 |
Q |
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| T |
4651130 |
tgtccgacacttgttgatatccaacaccaccatgacattgacacgcatactaaattacacttaatcacttccactttctctaattattactggtgtggtg |
4651031 |
T |
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| Q |
204 |
tctagactacattgtttcatacaaccaaaaggtgtcgattcggttgcttttagtcagattaatgagataccactgatgtgatggcagcat |
293 |
Q |
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| T |
4651030 |
tctagactacattgtttcatacaaccaaaaggtgttgattcggttgcttttagtcagattaatgagataccactgatgtgatggcagcat |
4650941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 114 - 286
Target Start/End: Original strand, 5572099 - 5572273
Alignment:
| Q |
114 |
ttgttgatatccaacaacaccatgacattgacacgcatactaaattacacttaatcacttccactttctctaattattactggtgt-ggtgtctagacta |
212 |
Q |
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| T |
5572099 |
ttgttgatatccaacaccgccatgacattgacacgcgtagttacttacacttaatcacttccaccttccctaattactactggtgtcggtgtctacacta |
5572198 |
T |
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| Q |
213 |
cattgtttcatac-aaccaaaaggtgtcgattcggttgcttttagtcagattaatgagataccactgatgtgatg |
286 |
Q |
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| T |
5572199 |
cattgtttcatacgtaccaaaaggtgtcgattcagttggttttagtcagattgaagagataccactgatgtgatg |
5572273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 41663304 - 41663441
Alignment:
| Q |
9 |
cagagtattaaaatttcaattaaaactactagctttggtgagat-ttagtaggcaaacaacggaacaccgatacttcacagtgaagacatgtctactgcc |
107 |
Q |
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| T |
41663304 |
cagagtattgaaagtccaattaaaactactgactttagtaagatattagtag-ctaacaatgtagcaccgatgcttcacaaagaagacatgtctagtgtc |
41663402 |
T |
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| Q |
108 |
cgacatttgttgatatccaacaacaccatgacattgaca |
146 |
Q |
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| T |
41663403 |
cgatatgtgttgctatccaacaccgcgatgacactgaca |
41663441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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