View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_33 (Length: 289)
Name: NF20226_high_33
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 36843847 - 36843566
Alignment:
| Q |
4 |
aaacaataatgaagtcacaacaaacaaccatagaattttagatgaaaataaacattgggaagtaagtcatccatgaattgaaacattatgttccagaaaa |
103 |
Q |
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| T |
36843847 |
aaacaataatgaagtcacaacaaacaaccatagaattttagatgaaaataaacattgggaagtaagtcatccatgaattgaaacattatgttccagaaaa |
36843748 |
T |
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| Q |
104 |
catgcaaaatcagaagtgaaacgtatagcaattcaaatggagcattaattaccattgctgaaaggcattgcaagcttgaggccctcaaacagcggttttc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36843747 |
catgcaaaatcagaagtgaaacgtatagcaattcaaatggagcactaattaccattgctgaaaggcattgcaagcttgaggccctcaaacagccgttttc |
36843648 |
T |
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| Q |
204 |
atgagtttcaccaggctcctgtgatagcatgcatactttcctcaccaatttctcaatgttatgagtgtaagtattatctacc |
285 |
Q |
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| T |
36843647 |
atgagtttcaccaggctcctgtgatagcatgcatactttcctcaccaatttctcaatgttatgagtgtaagtagaatctacc |
36843566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 88 - 285
Target Start/End: Original strand, 37512480 - 37512677
Alignment:
| Q |
88 |
attatgttccagaaaacatgcaaaatcagaagtgaaacgtatagcaattcaaatggagcattaattaccattgctgaaaggcattgcaagcttgaggccc |
187 |
Q |
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| T |
37512480 |
attatgttccagaaaacatgcaaatttggaagtgaaacgcataacaattcaaatggagcactagttaccattgctgaaaggcattgcaagcttgaggccc |
37512579 |
T |
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| Q |
188 |
tcaaacagcggttttcatgagtttcaccaggctcctgtgatagcatgcatactttcctcaccaatttctcaatgttatgagtgtaagtattatctacc |
285 |
Q |
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| T |
37512580 |
tcaaacagcggttttcatgtgtttcacctggctcctgtgatagcatgcatactttcctcaccaatttctcaatgttatgagtgtaagtagaatctacc |
37512677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 37512120 - 37512186
Alignment:
| Q |
4 |
aaacaataatgaagtcacaacaaacaaccatagaattttagatgaaaataaacattgggaagtaagt |
70 |
Q |
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|||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||| |
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| T |
37512120 |
aaacgataatgaagtcacaacaaacaaccacaaaattttacatgaaaataaacattggaaagtaagt |
37512186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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