View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_4 (Length: 528)
Name: NF20226_high_4
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 9 - 507
Target Start/End: Complemental strand, 36899440 - 36898939
Alignment:
| Q |
9 |
atgtaagtaaagtttgacaaataattattatagatttatggtcacgattgtattagagtaaaatttaataattctctagtgattggaagatacataccaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36899440 |
atgtaagtaaagtttgacaaataattattatagatttatggtcacgattgtattagagtaaaatttaataattctctagtgattggaagatacataccaa |
36899341 |
T |
|
| Q |
109 |
gtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggtccaacctacagtacctccaacattgtaggtagcagcatgaacaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36899340 |
gtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggtccaacctacagtacctccaacattgtaggtagcagcatgaacaag |
36899241 |
T |
|
| Q |
209 |
ctcagagttaagaacaaaaaagcagactagtagaaccaccatactgcctcttcccagagccatgttttctctactagtacttgctagaaagctgtgaaag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36899240 |
ctcagagttaagaacaaaaaagcagactagtagaaccaccacactgcctcttcccagagccatgttttctctactagtacttgctagaaagctgtgaaag |
36899141 |
T |
|
| Q |
309 |
aaagggatttggatgtaagaaaatttagaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatcttatgggaagttggtt |
408 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36899140 |
aaagggatttggatgtaagaaaatttggaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatcttatgggaagttggtt |
36899041 |
T |
|
| Q |
409 |
ag---gtagataccatagacgtgggtctgcccaaaatattcaatccgtaatgattcttgagatgtatgttttttagcacaagttgtaattgataattaag |
505 |
Q |
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| T |
36899040 |
agatagtagataccatagacgtgggtctgcccaaaatattcaatccgtaatgattcttgagatgtatgatttttagcacaagttgtaattgataattaag |
36898941 |
T |
|
| Q |
506 |
gt |
507 |
Q |
| |
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|| |
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| T |
36898940 |
gt |
36898939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 96 - 395
Target Start/End: Original strand, 37008905 - 37009197
Alignment:
| Q |
96 |
agatacataccaagtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggtccaacctacagtacctccaacattgtaggtag |
195 |
Q |
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|||||||||||||| || |||||||||||||| |||||||| || ||| ||||| |||||||||||||||||| ||| |||||||||| ||||||||| |
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| T |
37008905 |
agatacataccaagggtatcaccagccctaaagcgttttccattaggccatccaacagtgttaaaggtccaacctccaggacctccaacagtgtaggtag |
37009004 |
T |
|
| Q |
196 |
cagcatgaacaagctcagagttaagaacaaaaaagcagactagtagaaccaccatactgcctcttcccagagccatgttttctctactagtacttgctag |
295 |
Q |
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| T |
37009005 |
cagcatgagccaactcagagttaagaacaaaaaagcagactagtagaaccaatgcactgcctcttcccagagccatg-tttctctactattatttgctag |
37009103 |
T |
|
| Q |
296 |
aaagctgtgaaagaaagggatttggatgtaagaaaatttagaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatctta |
395 |
Q |
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||| |||||||||||||| | |||||| ||||| |||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
37009104 |
aaaactgtgaaagaaaggta-----atgtaa-tgaatttggaatgatgtggtaaggttttataattgaggagtgagtgaagaggcctgcaagaaatctta |
37009197 |
T |
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