View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_42 (Length: 252)
Name: NF20226_high_42
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_42 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 3580133 - 3580370
Alignment:
| Q |
15 |
aatattatttgtgcatctcactttagtattaaaaatagcttcacattatcgtaaatatatacgtcattaccaaaattactataaggatatttgatcttat |
114 |
Q |
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| T |
3580133 |
aatattatttgtgcatctcactttagtattaaaaatagcttcacattatcgtaaatatatacgtcattaccaaaattactataaggatatttgatcttat |
3580232 |
T |
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| Q |
115 |
ttgattttgtaattttaacaactgttttatggcgataaaataattcaaacctaaataatataggaggtgctactttcccctcccttgatgcagaaaactc |
214 |
Q |
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| T |
3580233 |
ttgattttgtaattttaacaactgttttatggcgataaaataattcaaacctaaataatataggaggtgctactttcccctcccttgatgcagaaaactc |
3580332 |
T |
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| Q |
215 |
tccatatttctgaaagtgtataaagtcattttttcagt |
252 |
Q |
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| T |
3580333 |
tccatatttctgaaagtgtataaagtcattttttcagt |
3580370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 3594045 - 3594277
Alignment:
| Q |
15 |
aatattatttgtgcat--ctcactttagtattaaaaatagcttcacattatcgtaaatatatacgtcattaccaaaattactataaggatatttgatctt |
112 |
Q |
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|||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3594045 |
aatattatttgtacatatctcacttcagtattaaaaatagcttcacattatcctaaatatatatgtcattaccaaaattactataaggatatttgatctt |
3594144 |
T |
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| Q |
113 |
atttgattttgtaattttaacaactgttttatggcgataaaataattcaaacctaaataatataggaggtgctactttcccctcccttgatgcagaaaac |
212 |
Q |
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| T |
3594145 |
atttgattttgtaattttaacaactgttttatggtgttaaaataattcaaaccta---aatatagggggtgctactttcccctcccttgatgcagaaaac |
3594241 |
T |
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| Q |
213 |
tctccatatttctgaaagtgtataaagtcatttttt |
248 |
Q |
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| T |
3594242 |
tctccatatttctgaaagtgtataaagtgatttttt |
3594277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 3571681 - 3571924
Alignment:
| Q |
17 |
tattatttgtgcatctcactttagtattaaaaatagcttcacattatcgtaaatatatacgtcattaccaaaattactataaggatatttgatcttattt |
116 |
Q |
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|||||||||| || ||||||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||| |
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| T |
3571681 |
tattatttgtaca-ctcacttaagtattaaaaatagtttcacattaccgtaaatatatatgtcattaccaaaattattataagcatatttgatcttattt |
3571779 |
T |
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| Q |
117 |
gattttgtaattttaacaactgttttatggcgataaaataattcaaac------ctaaat--------aatataggaggtgctactttcccctcccttga |
202 |
Q |
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| T |
3571780 |
gattttgtaattttaacaactgttttatggcgttaatataattcaaacgagaatttaaattaaacctaaatataaagggtgctactttcccctcccttga |
3571879 |
T |
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| Q |
203 |
tgcagaaaactctccatatttctgaaagtgtataaagtcattttt |
247 |
Q |
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| T |
3571880 |
tgcagaaaactctccatgtttctgaaagtgtatatagtgattttt |
3571924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 3566841 - 3566906
Alignment:
| Q |
170 |
taatataggaggtgctactttcccctcccttgatgcagaaaactctccatatttctgaaagtgtat |
235 |
Q |
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| T |
3566841 |
taatatagggggtgtgtctttcccctcccttgatgcggaaaactctccatgtttctgatagtgtat |
3566906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 3564411 - 3564450
Alignment:
| Q |
36 |
tttagtattaaaaatagcttcacattatcgtaaatatata |
75 |
Q |
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| T |
3564411 |
tttagtattaaaaatagtttcacattatcgtaaatatata |
3564450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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