View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20226_high_43 (Length: 250)
Name: NF20226_high_43
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_43 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 55016798 - 55016564
Alignment:
| Q |
16 |
atcaacaatttctctatacaacctctcttgaatctcttgatccatcactaaatgaagcaaagcccattcaatggccgttgcgctcgtgtcagtaccagca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55016798 |
atcaacaatttctctatacaacctctcttgaatctcttgatccatcactaaatgaagcaaagcccattcaatggccgttgcgctcgtgtcagtaccagca |
55016699 |
T |
|
| Q |
116 |
ctgataatctctgacacgagcgtaaccaattcctcgtctcccaatatccctctactaggcacttccaaaccaaacaatgaatccacataagcagcaccaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55016698 |
ctgataatctctgacacgagcgtaaccaattcctcgtctcccaatatccctctactaggcacttccaaaccaaacaatgaatccacataagcagcaccaa |
55016599 |
T |
|
| Q |
216 |
tggcactcacctgtcacatatagttgcatattaat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
55016598 |
tggcactcacctgtcacatatagttgcatattaat |
55016564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University