View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_46 (Length: 243)
Name: NF20226_high_46
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 42454811 - 42454600
Alignment:
| Q |
15 |
tgaataaccactaataatacaaacaaggtatcttttcttcctagctgaaagcaacattcaaaagaaaactataatacccttaacgacctcttccatcctt |
114 |
Q |
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| T |
42454811 |
tgaataaccagtaataatacaaacaaggtatcttttcttcctagctgaaagcaacattcaaaagaaaactataataccctcaacgacctcttccatcctt |
42454712 |
T |
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| Q |
115 |
ggaatttcttgcgtcacaaaattttcaaaacaattgtgtgtcaaataagaattaagcatttccaatgtttcttaccgaaggaagaggatacaaagtaatc |
214 |
Q |
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| T |
42454711 |
ggaatttcttgcgtcacaaatttttc-aaagaattgtgtgtcaaagaagaattaagcatttccaatgtttcttaccgaaggaggaggatacaaagtaatc |
42454613 |
T |
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| Q |
215 |
gaaaagagaaagt |
227 |
Q |
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|||||| |||||| |
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| T |
42454612 |
gaaaagggaaagt |
42454600 |
T |
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