View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_56 (Length: 202)
Name: NF20226_high_56
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_56 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 38184192 - 38183991
Alignment:
| Q |
1 |
gaagattggggtgaggatggaacgtgatgaggaagcaggtatagtgaaagctggggaaattatgaagtgtttggaagtggtgatggggaagggagaaaaa |
100 |
Q |
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| T |
38184192 |
gaagactgggttgagggtggaacgtgatgaggaagcaggtatagtgaaagctggggaaattatgaagtgtttggaagtggtgatggggaagggagaaaaa |
38184093 |
T |
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| Q |
101 |
ggagaggaacttagaaggaatgctaagaaatggaagaatttggctagtgaagctatgaaggaaggagggtcttcgaataagaatctgagcaaatttctag |
200 |
Q |
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| T |
38184092 |
ggagaggaacttagaaggaatgctaagaaatggaagagtttggctagtgaagctatgaaggaaggagggtcttcgaataagaatctgagcaaatttctag |
38183993 |
T |
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| Q |
201 |
at |
202 |
Q |
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|| |
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| T |
38183992 |
at |
38183991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 38179523 - 38179325
Alignment:
| Q |
1 |
gaagattggggtgaggatggaacgtgatgaggaagcaggtatagtgaaagctggggaaattatgaagtgtttggaagtggtgatggggaagggagaaaaa |
100 |
Q |
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| T |
38179523 |
gaagactggggtgaggatggaatgtgatgaggaag---ggatggtgaaagctgaggaaattagaaagtgttttgaagtggtgatggggaagggagaaaag |
38179427 |
T |
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| Q |
101 |
ggagaggaacttagaaggaatgctaagaaatggaagaatttggctagtgaagctatgaaggaaggagggtcttcgaataagaatctgagcaaatttctag |
200 |
Q |
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| T |
38179426 |
ggagaggaactaaggaggaatgctatgaaatggaaagatttagctagggcagctgtgaaagaaggggggtcttcaaataagaatttgagcaactttctag |
38179327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 38169709 - 38169524
Alignment:
| Q |
1 |
gaagattggggtgaggatggaacgtgatgaggaagcaggtatagtgaaagctggggaaattatgaagtgtttggaagtggtgatggggaagggagaaaaa |
100 |
Q |
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||||| |||| |||||||||||| ||||||||||| | || ||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38169709 |
gaagactgggttgaggatggaacatgatgaggaag---ggatggtgaaagttgaggaaattagaaagtgtttggaagtggtgatggggaagggagaaaaa |
38169613 |
T |
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| Q |
101 |
ggagaggaacttagaaggaatgctaagaaatggaagaatttggctagtgaagctatgaaggaaggagggtcttcgaataagaatctgag |
189 |
Q |
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| T |
38169612 |
ggagaggaactaaggaggaatgctaagaaatggaaagatttggctagggcagctgtgaaagaaggagggtcttcaaataggaatttgag |
38169524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 35054293 - 35054426
Alignment:
| Q |
56 |
gaaattatgaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaagaatttggctagtgaagcta |
155 |
Q |
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||||||| || ||||||||| ||||||||||||| ||||| |||||||||||| | ||||||| || |||||||||||| | |||||||| ||||| |
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| T |
35054293 |
gaaattaggaggtgtttggaggtggtgatggggagtggagagaaaggagaggaattgagaaggagtggaaagaaatggaaggagttggctagagaagcag |
35054392 |
T |
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| Q |
156 |
tgaaggaaggagggtcttcgaataagaatctgag |
189 |
Q |
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| T |
35054393 |
tgaaggaaggtggctcttcagaaaagaatctgag |
35054426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 35061031 - 35061111
Alignment:
| Q |
56 |
gaaattatgaagtgtttggaagtggtgatggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaag |
136 |
Q |
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||||||| ||||||||||||| ||||||||| | ||||| |||||||||||| | |||| |||||| | |||||||||| |
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| T |
35061031 |
gaaattaaaaagtgtttggaagaggtgatgggaagaggagagaaaggagaggaattgagaaagaatgcaatgaaatggaag |
35061111 |
T |
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