View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_6 (Length: 521)
Name: NF20226_high_6
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 43469317 - 43469564
Alignment:
| Q |
15 |
atgaaaataaacataaccaaaaccaatattttgtgtaactataaaaccatgtttagtctttacaaatgaatgaatcactcatcagaccctgtcaatacat |
114 |
Q |
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| T |
43469317 |
atgaaaataaacataaccaaaaccaatattttgtgtaactataaaaccatgtttagtctttacaaatgaatgaatcactcatcagaccctgtcaatacat |
43469416 |
T |
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| Q |
115 |
caaccataaccttcataacactcactctattttgcaaagacaatatgtaattagctgtctctctaaaaagtccatccaacccaatagattcatcactatt |
214 |
Q |
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| T |
43469417 |
caaccataaccttcataacactcactctattttgcaaagacagtatgtaattagctgtctctctaaaaagtccatccaacccaatagattcatcactatt |
43469516 |
T |
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| Q |
215 |
tggtataagtctcttcaatgttctcacacgtctctgaattccatatga |
262 |
Q |
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| T |
43469517 |
tggtataagtctcttcaatgttctcacacgtctctgaattccatatga |
43469564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 327 - 505
Target Start/End: Original strand, 43469629 - 43469796
Alignment:
| Q |
327 |
gtttgtgcatccaaaactttgctccataaatatgatgaattgttgtttacttcataagaaggttgtgaagaaattcccataactaaagaaaatattgaaa |
426 |
Q |
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| T |
43469629 |
gtttgtgcatccaaaactttgctccataaatatgatgaattgttgtttacttcataagaaggttgtgaataaattcccataactaaagaaaatattgaaa |
43469728 |
T |
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| Q |
427 |
gttttcaactcttgatgaatatttcaaaattcaagttccaaaggggtattgcaaaatgatagaccaagagagaacattt |
505 |
Q |
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| T |
43469729 |
-----------atgaataatatttcaaaattcaagttccaaaggggtattgcaaaatgatagaccaagagagaacattt |
43469796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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