View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_11 (Length: 448)
Name: NF20226_low_11
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 7100438 - 7099991
Alignment:
| Q |
1 |
tctgcagatatctcaggctttcattcatcacaatttttgtaagttttgttttactctatttatcattgtctttggattgctctacatatatataggtttt |
100 |
Q |
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| T |
7100438 |
tctgcagatatctctggttttcattcatcacaatttttgtaagttttgttttactctatttatcattgtctctggattgctctacatgtatataggtttt |
7100339 |
T |
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| Q |
101 |
ggttgccttattatttgtttcacttttcattttgaactcataataagtggccccatctatgtgaaacaaatctttcaagcgtgtatcatgagtactaaat |
200 |
Q |
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| T |
7100338 |
ggttgccttattatttgtttcacttttcatgttgaattcataataagtggccccatctatgtgaaacaaatctttcaagtgtgtatcatgagtactaaat |
7100239 |
T |
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| Q |
201 |
gagatagctgaggaattttccagaaactatgattttgggttgttgaaagtgaagataaacaatgattcaactaaaatgtatagagaaaacaaagatgata |
300 |
Q |
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| T |
7100238 |
gagatagctgaggaattttccagaaactatgattttgggttgttgaaagtgaagataaacaatgattcaactaaaatgtatagagaaaacaaagatgata |
7100139 |
T |
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| Q |
301 |
gataaggtacaaaatgtcattatcctgtgccttagagataaggtgttgagggaagtcgcgaaggagaagactccagcgacaatgtggaccaagttagaac |
400 |
Q |
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| T |
7100138 |
gataaggtacaaaatgtcattatcctgtgccttagagataaggtgttgagggaagtcgcgaaggagaagactccagcgacaatgtggaccaagttagaac |
7100039 |
T |
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| Q |
401 |
tggtgtacttggccaagtcattggatcataggctatgtctaaaacaac |
448 |
Q |
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| T |
7100038 |
tagtgtacttggccaagtcattggatcataggctatgtctaaaacaac |
7099991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7086826 - 7086780
Alignment:
| Q |
1 |
tctgcagatatctcaggctttcattcatcacaatttttgtaagtttt |
47 |
Q |
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| T |
7086826 |
tctgcagatatctcagggtttcattcatcacaatttttgtaagtttt |
7086780 |
T |
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