View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_12 (Length: 447)
Name: NF20226_low_12
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 55016597 - 55016183
Alignment:
| Q |
15 |
ggcactcacctgtcatatatagttgcatattaattagaattagttcaatattctttaaaatacttataacaaattttaatttggtctcaaacatatgcaa |
114 |
Q |
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| T |
55016597 |
ggcactcacctgtcacatatagttgcatattaattagaattagttcaatattctttaaaatacatataacaaattttaatttggtctcaaacatatgcaa |
55016498 |
T |
|
| Q |
115 |
agattaattnnnnnnnnnngcttatgtttaatctagacaagcacattaactttatttgaccaatttttgtttatattttcgacataaatggtcaaagaga |
214 |
Q |
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| T |
55016497 |
agattaattaaaaaaaa--gttgatgtttaatctagacaagcacattaactttatttgaccaatttttgtttatattttcgacataaatggtcaaagaga |
55016400 |
T |
|
| Q |
215 |
gttaattatattacctccaaaatttgtagtaccaaatacaaagtagttaaaagttagttatgattagtcggaagttaccatttcgggatctccacatttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55016399 |
gttaattatattacctccaaaatttgtagtaccaaatacaaagtagttaaaagttagttatgattagtcggaagttaccatttcgggatctccacatttt |
55016300 |
T |
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| Q |
315 |
ccatcacttttcacgtaaactttccgtttccttatcaacggcactataagctccagctgtttcttcctcagcttcttcgcttccttcacatgtccgcgga |
414 |
Q |
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| T |
55016299 |
ccatcactttccacgtaaactttccgtttccttatcaacggcgctataagctccagctgtttcttcctcagcttcttcgcttccttcacatgtccgcgga |
55016200 |
T |
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| Q |
415 |
ataatggtgttaaaacc |
431 |
Q |
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| T |
55016199 |
ataatggtgttaaaacc |
55016183 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 7974854 - 7974890
Alignment:
| Q |
157 |
acattaactttatttgaccaatttttgtttatatttt |
193 |
Q |
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| T |
7974854 |
acattaacttttattgaccaatttttgtttatatttt |
7974890 |
T |
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