View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_13 (Length: 441)
Name: NF20226_low_13
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_13 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 25526548 - 25526988
Alignment:
| Q |
1 |
acaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526548 |
acaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaa |
25526647 |
T |
|
| Q |
101 |
tccctttgattcatcattcttcttatttcaaagttcgatccaagttggaccattcttaatcaactcagcctcggccattttgttatttaacatgtaagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526648 |
tccctttgattcatcattcttcttatttcaaagttcgatccgagttggaccattcttaatcaactcagcctcggccattttgttatttaacatgtaagca |
25526747 |
T |
|
| Q |
201 |
tcatctttcctacccattctcctatatgtatcaaacaaaattgcgtatgtgctcgcatccggggtcatagacatggagtacatatcttgaaatagattct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526748 |
tcatctttcctacccattctcctatatgtatcaaacaaaattgcatatgtgcttgcatccggggtcatagacatggagtacatatcttgaaatagattct |
25526847 |
T |
|
| Q |
301 |
cagcttcagacaacatatcatgtgcacagaaaatggagatgagctgacagtagccatcaacatccaagaaaaaaggcttagaatcaggcttggttccaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25526848 |
cagcttcagacaacatatcatgtgcacagaaaatggagatgagctgacagtagccatcaacatccaagaaaaaaggcttagaatcaggtttggttccaac |
25526947 |
T |
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| Q |
401 |
tttcttcaaagttgcaagggcttcatcaaccttaccgagct |
441 |
Q |
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| T |
25526948 |
tttcttcaaagttgcaagggcttcatcaaccttaccgagct |
25526988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 256 - 441
Target Start/End: Original strand, 25534835 - 25535020
Alignment:
| Q |
256 |
catccggggtcatagacatggagtacatatcttgaaatagattctcagcttcagacaacatatcatgtgcacagaaaatggagatgagctgacagtagcc |
355 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||| |||||||||||| | ||| ||| |
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| T |
25534835 |
catccggagtcatagacatggagtacatctcttgaaatagattctcagcttcagacaacatatcatattcatcgaaactggagatgagcttagagttgcc |
25534934 |
T |
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| Q |
356 |
atcaacatccaagaaaaaaggcttagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaaccttaccgagct |
441 |
Q |
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| T |
25534935 |
atcaatatccaagaaaaaaggcctagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaatcttaccaagct |
25535020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 257 - 441
Target Start/End: Complemental strand, 25515619 - 25515428
Alignment:
| Q |
257 |
atccggggtcatagacatggagtacatatcttgaaatagattctcagcttcagacaacatatcatgtgcacagaaaatggagatgagctgacagtagcca |
356 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||| |||| |
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| T |
25515619 |
atccggggtcatagacatggagtacatctcttgaaatagattctcagcttcagacaacatatcattatgacagaaaagggagatgagcttagagttgcca |
25515520 |
T |
|
| Q |
357 |
tcaacatccaagaaaaaaggcttagaatcaggcttg-------gttccaactttcttcaaagttgcaagggcttcatcaaccttaccgagct |
441 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25515519 |
tcaacatccaagaaaaaaggcttagaatcaggcttggttccaagttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagct |
25515428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 25534552 - 25534719
Alignment:
| Q |
1 |
acaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534552 |
acaaagacaaaatatgcttagggtgtagctcagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaa |
25534651 |
T |
|
| Q |
101 |
tccctttgattcatcat------tcttcttatttcaaagttcgatccaagttggaccattcttaatcaa |
163 |
Q |
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| T |
25534652 |
t-cctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaa |
25534719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 25515864 - 25515738
Alignment:
| Q |
41 |
aaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaatccctttgattcatcattcttctta----tttcaaagttc |
136 |
Q |
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|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| || |||||| ||||||||| |
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| T |
25515864 |
aaaatgtcatactgttaaatgttaggatgcactgctttccttttgggattggattcagaatcactatgattcatctttgttcttatttttttcaaagtgt |
25515765 |
T |
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| Q |
137 |
gatccaagttggaccattcttaatcaa |
163 |
Q |
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||||| |||| |||||||||||||||| |
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| T |
25515764 |
gatccgagtttgaccattcttaatcaa |
25515738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 25541089 - 25541120
Alignment:
| Q |
41 |
aaaatgtcctactgttaaatgttaggatgtag |
72 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25541089 |
aaaatgtcctactgttaaatgttaggatgtag |
25541120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 25544412 - 25544491
Alignment:
| Q |
266 |
catagacatggagtacatatcttgaaatagattctcagcttcagacaacatatcatgtgcacagaaaatggagatgagct |
345 |
Q |
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||||| |||||||||||| |||||||| |||||||||||| |||||| ||| ||| | ||||||| ||||||| |||| |
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| T |
25544412 |
catagtcatggagtacatctcttgaaactgattctcagctttagacaaaataccatattcacagaacgtggagataagct |
25544491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 7946623 - 7946712
Alignment:
| Q |
33 |
gtttatgtaaaatgtcctactgttaaatgtt-aggatgtagtgctttccttttgggattggattcagaatccctttgattcatcattctt |
121 |
Q |
| |
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|||| |||||||||||||||| ||||||||| ||||| ||||| ||| ||||| |||||||| |||| |||||||||||||||| ||||| |
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| T |
7946623 |
gtttgtgtaaaatgtcctactattaaatgtttaggatttagtgattttctttttggattggaatcaggatccctttgattcatctttctt |
7946712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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