View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_17 (Length: 380)
Name: NF20226_low_17
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 29838442 - 29838792
Alignment:
| Q |
9 |
agcagagagtatcagatggtatgtaccaagtaatactacaaaatgattggtaaatgcttgcaaatcgtgtataaatggtgacaaccgcgtaataacttga |
108 |
Q |
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| T |
29838442 |
agcagagagtatcagatggtatgtaccaagtaatactacaaaaagattggtaaatgcttgcaaatcgcgtataaatggtgacaaccgcgtaataacttga |
29838541 |
T |
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| Q |
109 |
cattatcaaatgatcttgtttcttctgtgtgcttctgtgatcgtgcatgcgtgcatgtacatttaatgactagtaattgctaatttgtcgcaataggcaa |
208 |
Q |
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| T |
29838542 |
cattatcaaatgatcttgtttcttctgtgtgcttctgtgatcgtgcatgcgtgcatgtacatttaatgactagtaattgctaatttgtcgcaataggcaa |
29838641 |
T |
|
| Q |
209 |
attaaactgaaaagtagttaatatattctttcnnnnnnnnnngttccattttgccacaatccgataatgtgaaatttaatcttttggtatcgactgatag |
308 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29838642 |
attaaactgaaaagtagttaatatattcttt----tttttttgttccattttgccacaatccgataatgtgaaatttaatcttttggtatcgactaatag |
29838737 |
T |
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| Q |
309 |
aaagcagacgaacttctattgatatcttcttaaaggcttctggatatctggattg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838738 |
aaagcagacgaacttctattgatatcttcttaaaggcttctggatatctggattg |
29838792 |
T |
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