View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20226_low_18 (Length: 372)
Name: NF20226_low_18
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 37348254 - 37347912
Alignment:
| Q |
18 |
atatcatgtaactctaaacttgaatagtatcaaagtattgtagccattatgtattcggaaacccatacataattggccaacctccatgatcaaatttcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37348254 |
atatcatgtaactctaaacttgaatagtatcaaagtattgtagccattatgtattcggaaacccatacataattggccaacctccatgatcaaatttcgt |
37348155 |
T |
|
| Q |
118 |
gtgttctttgtctgcggttttcatatatgttttcttttgaaccggtgttgtaattctaacaagaactgacttgacctttacgatatatttttcttaatgt |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37348154 |
gtgttctttgtctacggttttcatatatgttttcttttgaaccggtgttgtaattctaacaagaactgacttgacctttacgatatatttttcttagtgt |
37348055 |
T |
|
| Q |
218 |
taatattgannnnnnnnataggtatcatccccataaatggcagtaataatggctttgcatggttgttattgtaacaatatagagtcggtaaatcagcgaa |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37348054 |
taatattgattttttttataggtatcatccccataaatggcagtaataatggctttgcatggttgttattgtaacaatatagagtcggtaaatcagcgaa |
37347955 |
T |
|
| Q |
318 |
gatcactcgacattcttggttttacaagctcgacttcatctca |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37347954 |
gatcactcgacattcttggttttacaagctcgatttcatctca |
37347912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 18030677 - 18030767
Alignment:
| Q |
88 |
aattggccaacctccatgatcaaatttcgtgtgttctttgtctgcggttttcatatatgttttcttttgaaccggtgttgtaattctaaca |
178 |
Q |
| |
|
|||||||| | |||||||||||||| | |||| ||| | || |||| ||| | ||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
18030677 |
aattggccgaactccatgatcaaatattgtgtattcctagtttgcgttttccgtatctgttttcttttgaactggtgttgctattctaaca |
18030767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 9681897 - 9681837
Alignment:
| Q |
107 |
tcaaatttcgtgtgttctttgtctgcggttttcatatatgttttcttttgaaccggtgttg |
167 |
Q |
| |
|
|||||| | ||||||||||||| | | |||||| ||||||||||||||||||||| |||| |
|
|
| T |
9681897 |
tcaaatctagtgtgttctttgtttacatttttcacatatgttttcttttgaaccggggttg |
9681837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University