View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_19 (Length: 370)
Name: NF20226_low_19
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 42071254 - 42070916
Alignment:
| Q |
20 |
ttcatcatagtatttattatatgtttcaggtaaagattgacataattaaggatatgttagtaaagaaataaataatgcagttgaaaatgctcctataaaa |
119 |
Q |
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| T |
42071254 |
ttcatcatagtatttattatatgtttcaggtaaagattgacataattaaggatatgttagtaaagaaataaataatgcagttgaaaatgctcctataaaa |
42071155 |
T |
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| Q |
120 |
agtgacattaaaatctctaaatggtcttatatttaaggacagaggaagtagttgttttttgagtgaatgctccttctcatgtaactttagtagttataga |
219 |
Q |
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| T |
42071154 |
agtgacattaaaatctctaaatggtcttatatttaaggacagaggaagtagttgttttttgagtgaatgctccttctcatgtaactttagtagttataga |
42071055 |
T |
|
| Q |
220 |
ctatagttacatttatgcatttcattctaacttcttgagtgtcttatgaaccttttttgtacataatggcacattaaagttgaaggagatggtcttggct |
319 |
Q |
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| T |
42071054 |
ctatagttacatttatgcatttcattctaacttcttgagtgtcttatgaaccttttttgtacataatggcacattaaagttgaaggagatggtcttggct |
42070955 |
T |
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| Q |
320 |
actttgactgaatcagaagttacagttacagaagatatt |
358 |
Q |
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| T |
42070954 |
actttgactgaatcagaagttacagttacagaagatatt |
42070916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 4681665 - 4681620
Alignment:
| Q |
61 |
ataattaaggatatgttagtaaagaaataaataatgcagttgaaaa |
106 |
Q |
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| T |
4681665 |
ataattaagggtatgttggtaaagaaataattaatgcagttgaaaa |
4681620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 635273 - 635228
Alignment:
| Q |
62 |
taattaaggatatgttagtaaagaaataaataatgcagttgaaaat |
107 |
Q |
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| T |
635273 |
taattagggctatgttagtaaagaaataaataatgcagttgaaaat |
635228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 13138844 - 13138798
Alignment:
| Q |
61 |
ataattaaggatatgttagtaaagaaataaataatgcagttgaaaat |
107 |
Q |
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| T |
13138844 |
ataaataagggtatgttagtaaagaaataattaatgtagttgaaaat |
13138798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 39315196 - 39315241
Alignment:
| Q |
62 |
taattaaggatatgttagtaaagaaataaataatgcagttgaaaat |
107 |
Q |
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|||||| || |||||||||||||||||| |||||||||||||||| |
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| T |
39315196 |
taattagggttatgttagtaaagaaatagttaatgcagttgaaaat |
39315241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 21777993 - 21778041
Alignment:
| Q |
59 |
acataattaaggatatgttagtaaagaaataaataatgcagttgaaaat |
107 |
Q |
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||||||||| | ||||||||||||||||||| ||||| |||||||||| |
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| T |
21777993 |
acataattagaggtatgttagtaaagaaataattaatgaagttgaaaat |
21778041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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