View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_23 (Length: 346)
Name: NF20226_low_23
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 27669488 - 27669166
Alignment:
| Q |
16 |
cacatgcatccaataatttaatcggagtaatggatatgtaaaacttgtttatgtatataccaattaaatctagtaataaatgacagtgaagttgtcaaat |
115 |
Q |
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| T |
27669488 |
cacatgtatccaataatttaatcgcagtaatggatatgtaaaacttgtttatgtaaataccaattaaatctagtaataaatgacagtgaagttgtcaaat |
27669389 |
T |
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| Q |
116 |
tctcaatatgaagtcacattagcaattatatattttgaaaactttcagctcttaaaagtttatcattcctatgtacagatactgaagatcctaaaaggga |
215 |
Q |
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| T |
27669388 |
tctcaatatgaagtcacattagcaattatatattttgaaaactttcagctcttaaaagtttatcattcctatgtacagatactgaagatcctaaaaggga |
27669289 |
T |
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| Q |
216 |
acaatgaagatgaatattgcttcaatgagtattcagagaatgaagaaaacattgatgatgaagtgtatccaaattcaagtacagagttacacctaactct |
315 |
Q |
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| T |
27669288 |
acaatgaagatgaatattgcttcaatgagtattcagagaatgaagaaaacatcgatgatgaagtgtatccaaattcaagtacagagttacacctaactct |
27669189 |
T |
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| Q |
316 |
tgcattacttggtgttgatgatg |
338 |
Q |
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| T |
27669188 |
tgcattacttggtgttgatgatg |
27669166 |
T |
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Back To:
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 55177263 - 55177204
Alignment:
| Q |
267 |
ttgatgatgaagtgtatccaaattcaagtacagagttacacctaactcttgcattacttg |
326 |
Q |
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||||||||||||| ||||||||||||||| |||| || ||||| | ||||||||||||| |
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| T |
55177263 |
ttgatgatgaagtctatccaaattcaagtgcagaattgcaccttagccttgcattacttg |
55177204 |
T |
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