View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20226_low_24 (Length: 345)
Name: NF20226_low_24
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 26997781 - 26997447
Alignment:
| Q |
1 |
ccatacataagttatgcctaactggatatttttctttgttcttaacctaaacttaattctagcacaatttacacaactacaatgtatgaaaatatcattg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26997781 |
ccatacataggttatgcctaactggatatttttctttgttcttaacctaaacttaattctagcacaatttacacaactataatgtatgaaaatatcattg |
26997682 |
T |
|
| Q |
101 |
catatgtatgtaggtggtccctggaaattaaggaagggggatttatacacgtaatgttgttgtccaatccattatccatttataggtcaagaaaaaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26997681 |
catatgtatgtaggtggtccctggaaattaaggaagggggatttatacacgtaatgttgttgtccaatccattatccatttataggtcaagaaaaaacta |
26997582 |
T |
|
| Q |
201 |
gtgggtattgtaggaaggaaaattaatggaggaaaacaaagtagtgtgatatcactatctagctcgtttgtttccagttaattgtttgacacttggaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26997581 |
gtgggtattgtaggaaggaaaattaaaggaggaaaacaaagtagtgtgatatcactatctagctcgtttgtttccagttaattgtttgacacttggaaat |
26997482 |
T |
|
| Q |
301 |
attgtattagtgctacatcttaaaatctatttcat |
335 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
26997481 |
attgtattggtgctacatcttaaaatctatttcat |
26997447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University