View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20226_low_25 (Length: 334)
Name: NF20226_low_25
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_25 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 5160173 - 5160497
Alignment:
| Q |
1 |
agtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5160173 |
agtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacata |
5160272 |
T |
|
| Q |
101 |
atcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaactt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5160273 |
atcataacattaattatttggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaactt |
5160372 |
T |
|
| Q |
201 |
ttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5160373 |
ttcatggaatagctttgaaggaaatataccttcatcaattggtaagataaaaaaacttttgctcttggacctctctcataatcatttctcgggtgagtta |
5160472 |
T |
|
| Q |
301 |
ccaaaacaactggccacaggttctg |
325 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
5160473 |
ccaaaacaactggccacagattctg |
5160497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 5182419 - 5182739
Alignment:
| Q |
2 |
gtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataa |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| || ||||||| ||| ||||||| ||||||| |||| |||||||||||||||| |||| |
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|
| T |
5182419 |
gtgtcattcctacttttctttcatatcaatataatttgatattcttggacctctccagaaacaatttagttggttcattcccaagttggttgatagataa |
5182518 |
T |
|
| Q |
102 |
tcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttt |
201 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||| ||||| ||||| |||||||| ||| | |||||||||| |||| || | ||||||||| |
|
|
| T |
5182519 |
tcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttaagtatttgaacttt |
5182618 |
T |
|
| Q |
202 |
tcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagttac |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
5182619 |
tcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttgagtacttggacctctctcagaatcatttctcaggtgagttac |
5182718 |
T |
|
| Q |
302 |
caaaacaactggccacaggtt |
322 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
5182719 |
ctaaacaactggccacaggtt |
5182739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 5195815 - 5196139
Alignment:
| Q |
1 |
agtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagt---tggttgatac |
97 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| | | ||| ||| ||| | ||||| ||| ||||||| ||||||| |||||||||| |
|
|
| T |
5195815 |
agtgtcattcctacttttctttcatatcaatataatttggtatacttggtcctctccagcaacaatataaatggctcactcccaagtaattggttgatac |
5195914 |
T |
|
| Q |
98 |
ataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaa |
197 |
Q |
| |
|
||||| || |||| | ||| |||||||||||||||||||||| ||||| ||||| |||||||| | | | |||||||||| | || ||| | ||||| |
|
|
| T |
5195915 |
ataatgatgacatgatatatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttcctaatgttacctatttgaa |
5196014 |
T |
|
| Q |
198 |
cttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgag |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
5196015 |
cttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttcaactcttggacttctctcaaaatcatttctcaggtgag |
5196114 |
T |
|
| Q |
298 |
ttaccaaaacaactggccacaggtt |
322 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
5196115 |
ttacctaaacaactggccacaggtt |
5196139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5173089 - 5173400
Alignment:
| Q |
1 |
agtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || ||||||| || | ||||| || ||||||||| |||||||||||||||| ||| |
|
|
| T |
5173089 |
agtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaatattgttggctcactcccaagttggttgataaata |
5173188 |
T |
|
| Q |
101 |
atcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaactt |
200 |
Q |
| |
|
|| || ||| | ||| ||||| |||||||||||||||| ||||| ||||| || || ||| |||||||||||||| ||| | |||||||| |
|
|
| T |
5173189 |
atgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaa------gatatattccttccaagtattacctatttgaactt |
5173282 |
T |
|
| Q |
201 |
ttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
5173283 |
ttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcataataatttctcaggtgagtta |
5173382 |
T |
|
| Q |
301 |
ccaaaacaactggccaca |
318 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
5173383 |
cctaaacaactggccaca |
5173400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4856913 - 4856686
Alignment:
| Q |
1 |
agtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacata |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| | || ||||||| ||| ||||||| ||||||| |||| |||||||| ||||||| ||| |
|
|
| T |
4856913 |
agtgtcattcctacttttctttcatatcaatataatttggtattcttggacctctccagaaacaatttagttggttcattcccaagttcgttgatagata |
4856814 |
T |
|
| Q |
101 |
atcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaactt |
200 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| ||||| ||||| |||||||| ||| | |||||||||| |||| ||| | |||||| | |
|
|
| T |
4856813 |
atcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttacctatttgaacat |
4856714 |
T |
|
| Q |
201 |
ttcatggaatagctttgaaggaaatata |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4856713 |
ttcatggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 5213978 - 5214296
Alignment:
| Q |
1 |
agtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacata |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||| ||| ||||||| ||| | |||||| | ||||| | || |||||| ||||| |||||| |
|
|
| T |
5213978 |
agtgtcattcctacttttctttcatatcaatatagtttgatattgatggacctatccagcaacaaattggttggtttattcccaagatggttcatacatt |
5214077 |
T |
|
| Q |
101 |
atcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaactt |
200 |
Q |
| |
|
| || | || ||| |||||||||||| ||||| ||||||||| || || |||||||| ||| | |||||||||| |||| ||| | |||| || |
|
|
| T |
5214078 |
cttcta---tgaaatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaattt |
5214174 |
T |
|
| Q |
201 |
ttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagtta |
300 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5214175 |
ttcatcaaataactttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagtta |
5214274 |
T |
|
| Q |
301 |
ccaaaacaactggccacaggtt |
322 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
5214275 |
cctaaacaactggccacaggtt |
5214296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 4842436 - 4842125
Alignment:
| Q |
1 |
agtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || ||||||| || | ||||| || ||||||| |||||||||||||||| ||| |
|
|
| T |
4842436 |
agtgtcattcctacttttctttcttatcaatataatttgatagtgatggacctctctagcaacaatat---tggctcactcccaagttggttgataaata |
4842340 |
T |
|
| Q |
101 |
atcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaactt |
200 |
Q |
| |
|
|| | ||| | ||| ||||| |||||||||||||||| ||||| ||||| || ||||| ||| | |||||||||| |||| ||| | |||| || |
|
|
| T |
4842339 |
atgttggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatattggtatattccttcctagtgttacctatatgaattt |
4842240 |
T |
|
| Q |
201 |
ttcatggaatagctttgaaggaaatataccttcatcaattggtaagatnnnnnnncttttgctcttggacctctctcataatcatttctcgggtgagtta |
300 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
4842239 |
ttcatcaaataactttgaaggaaatataccttcatcaatttgtaagatgaaaaaacttaagtacttggacctctctcagaatcatttctcaggtgagtta |
4842140 |
T |
|
| Q |
301 |
ccaaaacaactggcc |
315 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
4842139 |
cctaaacaactggcc |
4842125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 7142354 - 7142598
Alignment:
| Q |
3 |
tgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaag---ttggttgatacat |
99 |
Q |
| |
|
||||||||||| |||| |||| |||||| | |||||| || ||||||| ||| ||||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
7142354 |
tgtcattcctagttttttttcatatcaacataatttggcattcttggacctctccagaaacaatatagttggctcactcccaagaaattggttgatacat |
7142453 |
T |
|
| Q |
100 |
aatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaact |
199 |
Q |
| |
|
||| || || | || |||||||||||||||||||||||||||| ||||| || ||||| ||| | |||||||||| |||| | | |||||| |
|
|
| T |
7142454 |
aatgatgggatacaacatttggatatatcaaacaacaatttaagtggtttgcttccagaagatattggtatattccttcctagtgttgactatctgaact |
7142553 |
T |
|
| Q |
200 |
tttcatggaatagctttgaaggaaatataccttcatcaattggta |
244 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
7142554 |
tttcattgaatagctttcaaggaaatataccttaatcaattggta |
7142598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 5203271 - 5203324
Alignment:
| Q |
49 |
gacctttccggaaacaaaatagttggctcatccccaagttggttgatacataat |
102 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5203271 |
gaccttaccagaaacaaaatagttggctcattcccaagttggttgatacataat |
5203324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 4856676 - 4856621
Alignment:
| Q |
264 |
cttggacctctctcataatcatttctcgggtgagttaccaaaacaactggccacag |
319 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
4856676 |
cttggacctctctcagaatcatttctcaggtgagttacctgaacaattggccacag |
4856621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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