View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20226_low_26 (Length: 331)
Name: NF20226_low_26
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_26 |
 | |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 24911365 - 24911061
Alignment:
| Q |
11 |
caaaggcagcagcatagtcactcatggaatttattttcctaatattctcaggcttaaacttcagtacgtcaatcaaatacttcacaataaatgaatttcc |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24911365 |
caaaggcagcagcgtagtcactcatggaatttattttcctaatattctcaggcttaaactttagtacgtcaatcaaatacttcacaataaatgaatttcc |
24911266 |
T |
|
| Q |
111 |
attacacccgaccggtgaatttctttctttaagggtctggatatctaacaccgatggttttacttgtgaaatagttatggatgtcaaacttgctgtgaaa |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24911265 |
attacacccgactggtgaatttctttctttaagggtctggatatctaacaccgatggctttacttgtgaaatagttatggatgtcaaacttgctgtgaaa |
24911166 |
T |
|
| Q |
211 |
ctatttgtcacaatgaaaatagcaaataaccagggcgtcaatacaacctgagctaatggttttcttattggttctcctgcatattgaaaatgtataagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24911165 |
ctatttgtcacaatgaaaatagcaaataaccagggcgtcagtacaacctgagctaatggttttcttattggttctcctgcatattgaaaatgtataagaa |
24911066 |
T |
|
| Q |
311 |
ttagg |
315 |
Q |
| |
|
||||| |
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|
| T |
24911065 |
ttagg |
24911061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 24899204 - 24898899
Alignment:
| Q |
11 |
caaaggcagcagcatagtcactcatggaatttattttcctaatattctcaggcttaaacttcagtacgtcaatcaaatacttcacaataaatgaatttcc |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||| |||||||| |
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| T |
24899204 |
caaaggcagcagggtagtcactcatggaatttattttcctaatattctcaggcttaaactttaatacgtcagtcagatacttcacaataaaggaatttcc |
24899105 |
T |
|
| Q |
111 |
attacacccgaccggtgaatttctttctttaagggtctggatatctaacaccgatggttttacttgtgaaatagttatggatgtcaaacttgctgtgaaa |
210 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
24899104 |
attacacccgactggtgaatttctttctttaagagtctggatatctaacaccgatggttttacttgcgaaatagttattgatgtcaaacttgctgtgaaa |
24899005 |
T |
|
| Q |
211 |
ctatttgtcacaatgaaaatagcaaataaccagggcgtcaatacaacctgagctaatggttttcttattggttctcctgcatattgaaaatgtat-aaga |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
24899004 |
ctatttgtcacaatgaaaatagcaaataaccatggtgtcagtacaacttgagctaatggttttcttattggttctcctgcatattaaaaatgtatcaaga |
24898905 |
T |
|
| Q |
310 |
attagg |
315 |
Q |
| |
|
|||||| |
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|
| T |
24898904 |
attagg |
24898899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 24988133 - 24987965
Alignment:
| Q |
11 |
caaaggcagcagcatagtcactcatggaatttattttcctaatattctcaggcttaaa--cttcagtacgtcaatcaaatacttcacaataaatgaattt |
108 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||| |||||||||||||||||||||| |
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| T |
24988133 |
caaaggcagcagggtagtcactcatggaatttattttcctaatattctcaggcttaaaaactttaatacgtcagtcagatacttcacaataaatgaattt |
24988034 |
T |
|
| Q |
109 |
ccattacacccgaccggtgaatttctttctttaagggtctggatatctaacaccgatggttttacttgt |
177 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
24988033 |
ccattacacccgactggtgaatttctttcgttaagagtctggatatctaacaccgatggttttacttgt |
24987965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 150209 - 149919
Alignment:
| Q |
11 |
caaaggcagcagcatagtcactcatggaatttattttcctaatattctcaggcttaaacttcagtacgtcaatcaaatacttcacaataaatgaatttcc |
110 |
Q |
| |
|
|||||||||||| |||||| | |||||||| | ||| ||||| ||||||||||| || |||||||| ||| ||||||||||||||||||||||||||| |
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| T |
150209 |
caaaggcagcagggtagtcattaatggaattgaattttctaatgttctcaggcttgaatttcagtacttcagacaaatacttcacaataaatgaatttcc |
150110 |
T |
|
| Q |
111 |
attacacccgaccggtgaatttctttctttaagggtctggatatctaacaccgatggttttacttgtgaaatagttatggatgtcaaacttgctgtgaaa |
210 |
Q |
| |
|
|||||| || || ||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
150109 |
attacatccaactggtaaatttctttctttaagggtttggatatctaacacagatgactttacttgtgaaattgttatggatgttaaacttgctgtgaaa |
150010 |
T |
|
| Q |
211 |
ctatttgtcacaatgaaaatagcaaataaccagggcgtcaatacaacctgagctaatggttttcttattggttctcctgcatattgaaaat |
301 |
Q |
| |
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|||||||| ||||||||||||||||||||||| || || | |||||| ||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
150009 |
ctatttgttacaatgaaaatagcaaataaccatggtgttagtacaacttgagccaatggtcttcttattggttctcctacatattgaaaat |
149919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 73 - 313
Target Start/End: Complemental strand, 142005 - 141764
Alignment:
| Q |
73 |
agtacgtcaatcaaatacttcacaataaatgaatttccattacacccgaccggtgaatttctttctttaagggtctggatatctaacaccgatggtttta |
172 |
Q |
| |
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||||| ||| |||||||||| |||||||| |||||||||| ||| || | ||| |||||||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
142005 |
agtacttcagtcaaatacttgacaataaaagaatttccatcacaaccaatcggggaatttctttctttaagggtctcgatatttaacaccgatggcttta |
141906 |
T |
|
| Q |
173 |
cttgtgaaatagttatggatgtcaaacttgctgtgaaactatttgtcacaatgaaaatagcaaataaccagggcgtcaatacaacctgagctaatggttt |
272 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| | ||||| ||| | |
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| T |
141905 |
cttgtgaaatagttatggatgtcaaacttgccgtgaaactatttgtcacaatgaaaatagcaaagaaccatggtgtcagcacaactcgtgctaagggtct |
141806 |
T |
|
| Q |
273 |
tcttattggttctcctgcatattgaaaatgtat-aagaatta |
313 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
141805 |
tcttattggttctcctgcatattgaatatgtatcaagaatta |
141764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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