View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_3 (Length: 548)
Name: NF20226_low_3
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 47383037 - 47382505
Alignment:
| Q |
1 |
tacaaaacctttgaaataaaagagtaagtgcttgatgaattatatgtttatatacaaatggtgaagaaaatgttatggggggaaaatcaatgttttacaa |
100 |
Q |
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| T |
47383037 |
tacaaaacctttgaaataaaagagtaagtgcttgatgaattatatgtttatatacaaatggtgaagaaaatgttatgggggaaaaatcaatgttttacaa |
47382938 |
T |
|
| Q |
101 |
gaattatgattcgctaaaatagtggtttaggtacgtgtttggggctgtctgatccatgcatcatgattgtgttttgggaaaatctagatccaacaaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47382937 |
gaattatgattcgctaaaatagtggtttaggtacgtgtttggggctgtctgatccatgcatcatgattgtgttttgggaaaatctagatccaacaaaaca |
47382838 |
T |
|
| Q |
201 |
agatccaatgccttttatttttctgcgtagggtttgaaatttcaaggatatatacacaatagtgagtcctactaggcatgatatgttctgtctgcattga |
300 |
Q |
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| T |
47382837 |
agatccaatgccttttatttttctgcgtagggtttgaaatttcaaggatatatacacaatagtgagtcctactaggcatgatatgttctgtctgcattga |
47382738 |
T |
|
| Q |
301 |
tgaagcaaattcaaatatcctcatgataacttgccttaatgtgtccatggatataagttctttggtggcattcacatcacatcattgtttcannnnnnnn |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47382737 |
tgaagcaaattcaaatatcctcatgataacttgccttaatgtgtccatggatataagttctttggtggcattcacatcacatcattgtttcatttttttt |
47382638 |
T |
|
| Q |
401 |
gcttatgaccaatagtattaataagattttaattcacatatattcccgtataaattaatgttgatttagtttgcgtatagaacttaacttcgaagagtaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47382637 |
gcttatgaccaatagtattaataagattttaattcacatacattcccgtataaattaatgttgatttagtttgcgtatagaacttaacttcgaagagtaa |
47382538 |
T |
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| Q |
501 |
tttggttagggattttaagtacccctatatatt |
533 |
Q |
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| T |
47382537 |
tttggttagggattttaagtacccctatatatt |
47382505 |
T |
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