View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20226_low_32 (Length: 291)
Name: NF20226_low_32
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 21355138 - 21354884
Alignment:
| Q |
16 |
atgtggagagtaggaaaagaaattgtgaaaaaattaatagaggctaatcatttgtattttgcactacattggacccttcaaatcaaacgactacctaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21355138 |
atgtggagagtaggaaaagaaattgtgaaaaaattaatagaggctaatcatttgtattttgcactacattggacccttcaaatcaaacgactacctaatc |
21355039 |
T |
|
| Q |
116 |
ctcacaatctcactagcaatagctaagaaagctccaaaccacgtttacattt-agggcgtttgtttcacctctacaaattaatttctcaggaatttaaga |
214 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21355038 |
ctcacaatcccactagcaatacctaagaaagctccaaaccaagtttatatttgggggcgtttgtttcacctctacaaattaatttctcagaaatttaaga |
21354939 |
T |
|
| Q |
215 |
tgaaaatgatttattctcatttttggcaaacattcacacaatccctttgtgtttg |
269 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
21354938 |
tgaaaatgatttattctcatatttggtagacattcacacaatccctttgtgtttg |
21354884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University