View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_33 (Length: 291)
Name: NF20226_low_33
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 39099732 - 39099471
Alignment:
| Q |
11 |
taatactaagaagaataatagtactagccgtttgcttacaacttacaagaataagttgccaaactatagatgagtgaataataattatgcatatttgaaa |
110 |
Q |
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| T |
39099732 |
taatactaagaagaataatagtactagccgtttgcttacaacttacaagaataagttgccaaactatagatgagtgaataataattatgcatatttgaaa |
39099633 |
T |
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| Q |
111 |
ttcagttttcataaagcacattaatttacaaatatatttcaacaaaaagttggcactaagttagatctgcagcagaataaattctatataaaatcttaat |
210 |
Q |
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| T |
39099632 |
ttcagttttcataaagcacattaatttacaaatatatttcatcaaaaagttggcactaagttagatctgcagcagaataaattctatataaaatcttaat |
39099533 |
T |
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| Q |
211 |
aaataattggttgaagaagttggaaagttagatctgcagactcccaaaagtgagaggaggacc |
273 |
Q |
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| T |
39099532 |
-aataattggttgaagaagttggaaagttagatctgcaggctcccaaaagtgagaggaggacc |
39099471 |
T |
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