View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_34 (Length: 290)
Name: NF20226_low_34
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3895300 - 3895519
Alignment:
| Q |
1 |
tgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcagagaagacgggggaggtt |
100 |
Q |
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| T |
3895300 |
tgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcggagaagacgggggaggtt |
3895399 |
T |
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| Q |
101 |
gctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatca |
200 |
Q |
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| T |
3895400 |
gctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatca |
3895499 |
T |
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| Q |
201 |
aggagactgttgttggaaag |
220 |
Q |
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| T |
3895500 |
aggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
242 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
278 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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