View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_39 (Length: 269)
Name: NF20226_low_39
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 35951914 - 35951789
Alignment:
| Q |
124 |
ggtcatcatcatcaaataataataagcatgaaattgttcagatgcttgaaactgggcagcaaaatgaaatgcctccattggatgatgatgtggcaatgaa |
223 |
Q |
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| T |
35951914 |
ggtcatcatcatcaaataataataagcatgaaattgttcagatgcttgaaactgggcagcaaaatgaaatgcctccattggatgatgatgtggcaatgaa |
35951815 |
T |
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| Q |
224 |
gaaacatctcaaggcatgggcttatg |
249 |
Q |
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| T |
35951814 |
gaaacatctcaaggcatgggcttatg |
35951789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35952034 - 35951991
Alignment:
| Q |
1 |
ataacaagaccgcggcgtgccaaaaatcttcatcatcagcagtt |
44 |
Q |
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| T |
35952034 |
ataacaagaccgcggcgtgccaaaaatcttcatcatcagcagtt |
35951991 |
T |
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