View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_47 (Length: 247)
Name: NF20226_low_47
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 36843973 - 36844191
Alignment:
| Q |
11 |
ggcaggtttggttcattgacatacaaacattcatttattatatcaaatacagaaaaatgtctcttataattagatgataatatgtgcagatgcgtctgct |
110 |
Q |
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| T |
36843973 |
ggcaggtttggttcattgacatacaaacattcatttattatatcaaatgcagaaaaatgtctcttataattagatgataatatgtgcagatgtgtctgct |
36844072 |
T |
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| Q |
111 |
tatattttactagtattggcaacatttgtttcatcaattttcatcctgttaatttatctgtttctctccttatagctatcattcaaaaaggtttaagaag |
210 |
Q |
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| T |
36844073 |
tatattgtactagtattggcaacatttgtttcatcaattttcatcctgttaatttatctgtttctctccttatagttatcattcaaaaaggtttaagaag |
36844172 |
T |
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| Q |
211 |
aaagaaaatcatcgtcaaaat |
231 |
Q |
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| T |
36844173 |
aa--aaaatcatcgtcaaaat |
36844191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 18929772 - 18929915
Alignment:
| Q |
87 |
ataatatgtgcagatgcgtctgcttatattttactagtattggcaacatttgtttcatcaattttcatcct-gttaatttatctgtttctctccttatag |
185 |
Q |
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||||||||||||||||||| ||||||| ||||| ||| ||||||||| || |||||||||||||||||| || |||||||| |||||||||||||||| |
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| T |
18929772 |
ataatatgtgcagatgcgtttgcttat--tttacgagtgttggcaacacttcgttcatcaattttcatccttgtaaatttatccgtttctctccttatag |
18929869 |
T |
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| Q |
186 |
ctatcattcaaaaaggtttaagaagaaagaaaatcatcgtcaaaat |
231 |
Q |
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| T |
18929870 |
ttatcattcaaaaaggtttaagaagaaagaacatcatcgtcaaaat |
18929915 |
T |
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