View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20226_low_48 (Length: 246)

Name: NF20226_low_48
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20226_low_48
NF20226_low_48
[»] chr6 (22 HSPs)
chr6 (18-241)||(4835484-4835707)
chr6 (46-105)||(4299318-4299377)
chr6 (46-105)||(4514618-4514677)
chr6 (47-105)||(4259652-4259710)
chr6 (46-105)||(3172317-3172376)
chr6 (46-105)||(4256121-4256180)
chr6 (47-105)||(4461699-4461757)
chr6 (43-105)||(4598747-4598809)
chr6 (46-105)||(4266663-4266722)
chr6 (51-105)||(4626527-4626581)
chr6 (52-105)||(4564287-4564340)
chr6 (46-105)||(4458171-4458230)
chr6 (46-105)||(4516897-4516956)
chr6 (46-97)||(4568628-4568679)
chr6 (46-105)||(4622716-4622775)
chr6 (51-105)||(4489857-4489911)
chr6 (64-105)||(4481269-4481310)
chr6 (64-105)||(4561080-4561121)
chr6 (49-105)||(4470379-4470435)
chr6 (50-105)||(4503898-4503953)
chr6 (50-105)||(4574884-4574939)
chr6 (105-217)||(4829206-4829319)
[»] chr7 (1 HSPs)
chr7 (46-105)||(3086996-3087055)
[»] chr5 (1 HSPs)
chr5 (46-105)||(24103575-24103634)
[»] scaffold0477 (1 HSPs)
scaffold0477 (51-103)||(4188-4240)
[»] scaffold0288 (1 HSPs)
scaffold0288 (54-101)||(3224-3271)
[»] scaffold0199 (1 HSPs)
scaffold0199 (51-105)||(39-93)
[»] chr8 (1 HSPs)
chr8 (51-105)||(1674802-1674856)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 4835484 - 4835707
Alignment:
Q  18 atctagtgtatggtccctttctcctcatttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaacacatcggcaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4835484 atctagtgtatggtccctttctcctcatttggcatctttaggttccgatctttggaaggaagatacaaaatgtcttgaatggcttgaacacatcggcaat 4835583  T
Q  118 catctgagccgcactttcccaataagtcaaatttgccgcttttccaactttgagacgcaagttttcgttggtgtattgacagatacaaatactatgtcag 217  Q
    ||||||||  |||||||||||||| ||||||| |||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  4835584 catctgagttgcactttcccaatacgtcaaatctgccacttttccaacattgaggcgcaagtttttgttggtgtattgacagatacaaacactatgtcag 4835683  T
Q  218 ttgtataacatattcttcgacatc 241  Q
     |||||||||| || || ||||||    
T  4835684 ctgtataacatgttttttgacatc 4835707  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 4299318 - 4299377
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  4299318 ttggaatctttaggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaa 4299377  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 4514618 - 4514677
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  4514618 ttggaatctttaggttccaatctttggaaagaagatactaaatgtcttgaatggcttgaa 4514677  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 4259652 - 4259710
Alignment:
Q  47 tggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  4259652 tggcatcgttaggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaa 4259710  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 3172376 - 3172317
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||    
T  3172376 ttggcatctttagattctaatctttggaaagaagatactaaatgtcttgaatggcttgaa 3172317  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 4256121 - 4256180
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  4256121 ttggcatcgttaggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaa 4256180  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 4461757 - 4461699
Alignment:
Q  47 tggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||    
T  4461757 tggcatctttaaattccaatctttggaaagaagatactaaatgtcttgaatggcttgaa 4461699  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 4598809 - 4598747
Alignment:
Q  43 catttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||||||||||||||||| ||||||||||||| |||||||| || |||||||| |||||||||    
T  4598809 catttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaa 4598747  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 4266663 - 4266722
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||||  ||||||||||||||| |||||||| ||||||||||| |||||||||    
T  4266663 ttggcatctttaaattccaatctttggaaagaagatactaaatgtcttgagtggcttgaa 4266722  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 4626581 - 4626527
Alignment:
Q  51 atctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||||||||||||||||||||||| ||||| || || ||||||||||||||||||    
T  4626581 atctttaggttccaatctttggaaagaagacaccaattgtcttgaatggcttgaa 4626527  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 4564340 - 4564287
Alignment:
Q  52 tctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||||||||||    
T  4564340 tctttaggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaa 4564287  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 4458230 - 4458171
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||||  ||||||||||||||| ||| |||| ||||||||||| |||||||||    
T  4458230 ttggcatctttaaattccaatctttggaaagaatatactaaatgtcttgagtggcttgaa 4458171  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 4516956 - 4516897
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||| ||| ||||||| ||||||||||| |||||||  |||||||||||||||||||||    
T  4516956 ttggcttctataggttctaatctttggaaagaagatatgaaatgtcttgaatggcttgaa 4516897  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 4568679 - 4568628
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaat 97  Q
    ||||| ||||||||||||||||||||||| |||||||  |||||||||||||    
T  4568679 ttggcttctttaggttccaatctttggaaagaagatatgaaatgtcttgaat 4568628  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 4622775 - 4622716
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||| ||||||||||||||||||| |||||||  || |||||||| |||||||||    
T  4622775 ttggcatctctaggttccaatctttggaaagaagatatcaagtgtcttgagtggcttgaa 4622716  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 4489857 - 4489911
Alignment:
Q  51 atctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||  || ||||||||||| |||||||| |||||||||||||||||||||    
T  4489857 atctttagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaa 4489911  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 4481310 - 4481269
Alignment:
Q  64 aatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  4481310 aatctttggaaagaagatactaaatgtcttgaatggcttgaa 4481269  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 4561121 - 4561080
Alignment:
Q  64 aatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  4561121 aatctttggaaagaagatactaaatgtcttgaatggcttgaa 4561080  T

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Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 4470435 - 4470379
Alignment:
Q  49 gcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||||||||  || |||||||||||| |||||||| ||||||||||| |||||||||    
T  4470435 gcatctttaaatttcaatctttggaaagaagatactaaatgtcttgagtggcttgaa 4470379  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 4503898 - 4503953
Alignment:
Q  50 catctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||||||||  || ||||||||||| |||||||| ||||||||||| |||||||||    
T  4503898 catctttagactctaatctttggaaagaagatactaaatgtcttgattggcttgaa 4503953  T

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Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 4574939 - 4574884
Alignment:
Q  50 catctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    |||||||||  || ||||||||||| |||||||| ||||||||||||||| |||||    
T  4574939 catctttagactctaatctttggaaagaagatactaaatgtcttgaatggattgaa 4574884  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 4829206 - 4829319
Alignment:
Q  105 acacatcggcaatcatctgagccgcactttcccaataagtcaaatttgccgcttttccaactttgaga-cgcaagttttcgttggtgtattgacagatac 203  Q
    ||||||||||||||| | ||| |||||| |||||||| ||||||| | |  |||||||| |  ||||| ||| |||||| ||  ||||||  ||||||||    
T  4829206 acacatcggcaatcacccgagtcgcactctcccaatacgtcaaatctactacttttccagccctgagaccgcgagtttttgtcagtgtatcaacagatac 4829305  T
Q  204 aaatactatgtcag 217  Q
    ||| ||||||||||    
T  4829306 aaacactatgtcag 4829319  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 3087055 - 3086996
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  3087055 ttggcatctttaggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaa 3086996  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 24103634 - 24103575
Alignment:
Q  46 ttggcatctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||||  ||||||||||||||| |||||||| ||||||||||| |||||||||    
T  24103634 ttggcatctttaaattccaatctttggaaagaagatactaaatgtcttgagtggcttgaa 24103575  T

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Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 4188 - 4240
Alignment:
Q  51 atctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttg 103  Q
    |||||||||||||||||||||||| |||||||| || |||||||| |||||||    
T  4188 atctttaggttccaatctttggaaagaagataccaagtgtcttgagtggcttg 4240  T

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Target: scaffold0288 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 3224 - 3271
Alignment:
Q  54 tttaggttccaatctttggaaggaagatacaaaatgtcttgaatggct 101  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||    
T  3224 tttaggttccaatctttggaaagaagataccaagtgtcttgaatggct 3271  T

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Target: scaffold0199 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 93 - 39
Alignment:
Q  51 atctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||||||| |||||||| ||||||||  | ||||||||||||||||||    
T  93 atctttaggttccaacctttggaaagaagatactgagtgtcttgaatggcttgaa 39  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 1674856 - 1674802
Alignment:
Q  51 atctttaggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 105  Q
    ||||||||||||||| |||||||| ||||||||  | ||||||||||||||||||    
T  1674856 atctttaggttccaacctttggaaagaagatactgagtgtcttgaatggcttgaa 1674802  T

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