View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_5 (Length: 524)
Name: NF20226_low_5
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_5 |
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| [»] scaffold0291 (2 HSPs) |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Original strand, 8415444 - 8415939
Alignment:
| Q |
19 |
agctatgtctccaacaacggtttgaatccttcccgcaacacttctaagcctatcatacctcattcttaccacatcatgtggtttagaacttggaaatgtg |
118 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
8415444 |
agctatgtctccaacaaccgtttgaatccttcccgcaacacttctaagcctatcatacctcattctcaccacatcatgaggtttagaacttggaaatgta |
8415543 |
T |
|
| Q |
119 |
tcaaactcttcgtcgagttcgtctggattagctccttcggcccatgagagtttagtatccatgtgaggtggatttcttggacgaaatcgatagttccata |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8415544 |
tcaaactcttcatcgagttcgtctggattagctccttcggcccatgagagtttagtatccatgtgaggtggatttcttggacgaaatcgatagttccata |
8415643 |
T |
|
| Q |
219 |
aaccaatcaagaacatgtagagaaatattgtcggaagaatcaattctggatacaaaatcaatatcaggaatagaatgtgaactagtattgatgtgaccgg |
318 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
8415644 |
aaccaattaagaacatgtagagaaatatagtcggaagaatcaattctggatacaaaatcaatattaggaatagaatgtgtactagtaccgatgtgaccgg |
8415743 |
T |
|
| Q |
319 |
attcttccaattgcatacttggttgaaccatttccccattgtgatcgcgctagaaaaaagcgacatcatgcgaaagaagttagctttgcttcttctcatg |
418 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
8415744 |
attcttccaattgcaaacttggttgaaccatttccccattgtgatcgcgctagaaaaaagcgacatcatgcgaaagaagttggctttgcttcttctcatg |
8415843 |
T |
|
| Q |
419 |
ctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcctaagaggaggttcggctctacctagcctcatagctacgatattcatc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8415844 |
ctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcctaagaggaggttcggctctacctagcctcatagctacgatattcatc |
8415939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 513
Target Start/End: Original strand, 7915006 - 7915500
Alignment:
| Q |
19 |
agctatgtctccaacaacggtttgaatccttcccgcaacacttctaagcctatcatacctcattcttaccacatcatgtggtttagaacttggaaatgtg |
118 |
Q |
| |
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||||||||| ||||||| ||||||||||| || ||||| ||||||| ||||| ||||||||||| || ||||||||| | || ||||||||||| |
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| T |
7915006 |
agctatgtcgccaacaattgtttgaatcctacctgcaacggttctaagtctatcgtacctcattctcactgcatcatgtgaccttgatgttggaaatgtg |
7915105 |
T |
|
| Q |
119 |
tcaaactcttcgtcgagttcgtctggattagctccttcggcccatgagagtttagtatccatgtgaggtggatttcttggacgaaatcgatagttccata |
218 |
Q |
| |
|
|||||||||||||| ||||| ||||||| | | || |||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||| |
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|
| T |
7915106 |
tcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggttgtctcggacgaaaccgatagttccata |
7915205 |
T |
|
| Q |
219 |
aaccaatcaagaacatgtagagaaatattgtcggaagaatcaattctggatacaaaatcaatatcaggaatagaatgtgaactagtattgatgtgaccgg |
318 |
Q |
| |
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| ||||||||||||||||||||||| ||| || || ||||||||||||||| | | |||||||| || || |||||||||||||||||||| | | |
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| T |
7915206 |
agccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattgatgtaatgtg |
7915305 |
T |
|
| Q |
319 |
attcttccaattgcatacttggttgaaccatttccccattgtgatcgcgctagaaaaaagcgacatcatgcgaaagaagttagctttgcttcttctcatg |
418 |
Q |
| |
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||||||||| | || || | ||||||||| | || ||||||||| | || ||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
7915306 |
attcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacacgaaagaagttagctttgcttcttctcatg |
7915405 |
T |
|
| Q |
419 |
ctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcctaagaggaggttcggctctacctagcctcatagctacgatattcat |
513 |
Q |
| |
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||||| |||| ||||||||||| | |||||||||||| || ||||| || || ||||| |||||||| |||||||| || || |||||||| |
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| T |
7915406 |
ctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaatattcat |
7915500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 7834297 - 7833875
Alignment:
| Q |
19 |
agctatgtctccaacaacggtttgaatccttcccgcaacacttctaagcctatcatacctcattcttaccacatcatgtggtttagaacttggaaatgtg |
118 |
Q |
| |
|
||||||||| ||||||| | ||||||||| || |||||| |||| |||||||||||||||||||| || ||||||| | | | || ||||||||||| |
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| T |
7834297 |
agctatgtcaccaacaattgcttgaatcctacctgcaacagttcttagcctatcatacctcattctcactgcatcatgcgatcttgatgttggaaatgtg |
7834198 |
T |
|
| Q |
119 |
tcaaactcttcgtcgagttcgtctggattagctccttcggcccatgagagtttagtatccatgtgaggtggatttcttggacgaaatcgatagttccata |
218 |
Q |
| |
|
||||||||| | || ||||| || ||| | | ||| ||| ||||||||||||||||||||||||| || | || ||||||||| ||||||| |||| |
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|
| T |
7834197 |
tcaaactctccatcaagttcatcatgatgaacagattcagccgatgagagtttagtatccatgtgaggcggttgtcgaggacgaaattgatagtttcata |
7834098 |
T |
|
| Q |
219 |
aaccaatcaagaacatgtagagaaatattgtcggaagaatcaattctggatacaaaatcaatatcaggaatagaatgtgaactagtattgatgtgaccgg |
318 |
Q |
| |
|
| ||||||||| ||||| |||||||| ||||| || ||||||||||||||| | |||| ||||| || || ||||||||||| ||||| |||| | |
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|
| T |
7834097 |
agccaatcaaggacatgaagagaaatcaagtcggtagtatcaattctggataccatatcagtatcaaaaagaggatgtgaactagaattgacgtgatgtg |
7833998 |
T |
|
| Q |
319 |
attcttccaattgcatacttggttgaaccatttccccattgtgatcgcgctagaaaaaagcgacatcatgcgaaagaagttagctttgcttcttctcatg |
418 |
Q |
| |
|
||||||||||| || || | ||||||||| | || || || || | | |||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7833997 |
attcttccaatgacaaacatcattgaaccatcttccgatggtcattaatccgaaggaaagggacatcacacgaaagaagttagctttgcttcttctcatg |
7833898 |
T |
|
| Q |
419 |
ctccacatatgtgaatcaacatc |
441 |
Q |
| |
|
||||| |||| ||||||||||| |
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|
| T |
7833897 |
ctccatatattggaatcaacatc |
7833875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 7880244 - 7880420
Alignment:
| Q |
63 |
taagcctatcatacctcattcttaccacatcatgtggtttagaacttggaaatgtgtcaaactcttcgtcgagttcgtctggattagctccttcggccca |
162 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||| | | || ||||||||||||||||||||||||| ||||| || |||| | ||| | ||| |
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|
| T |
7880244 |
taagtctatcatacctcattctcactgcatcatgtgatcttgatgttggaaatgtgtcaaactcttcgtcaagttcatcaggatgactagattcaggcca |
7880343 |
T |
|
| Q |
163 |
tgagagtttagtatccatgtgaggtggatttcttggacgaaatcgatagttccataaaccaatcaagaacatgtagag |
240 |
Q |
| |
|
|||||||||| ||||||||||||| || | ||| ||||||| |||||||||||||| ||| ||||||||||| |||| |
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|
| T |
7880344 |
tgagagttta-tatccatgtgaggcggttgtctcagacgaaaccgatagttccataagccagtcaagaacatgcagag |
7880420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 7832794 - 7832969
Alignment:
| Q |
67 |
cctatcatacctcattcttaccacatcatgtggtttagaacttggaaatgtgtcaaactcttcgtcgagttcgtctggattagctccttcggcccatgag |
166 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| | | || ||||||||||||||||| ||| || ||||| || |||| | | ||| ||||||||| |
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|
| T |
7832794 |
cctatcatacctcattctcaccatatcatgtgatcttgatgttggaaatgtgtcaaacactttatcaagttcatcaggatgaacatattcagcccatgag |
7832893 |
T |
|
| Q |
167 |
agtttagtatccatgtgaggtggatttcttggacgaaatcgatagttccataaaccaatcaagaacatgtagagaa |
242 |
Q |
| |
|
|||||||| ||||||| | ||| | | |||| ||| |||||||||||||| ||||| |||||| ||||||||| |
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|
| T |
7832894 |
agtttagtctccatgtaaagtgattgtggaggacaaaaccgatagttccataagccaatgaagaacttgtagagaa |
7832969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 468
Target Start/End: Original strand, 24949952 - 24950028
Alignment:
| Q |
392 |
aagaagttagctttgcttcttctcatgctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcct |
468 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||| ||||| | |||||| || ||| | |||||||| |
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|
| T |
24949952 |
aagaaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcatgtattctactacttctttcct |
24950028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 7880516 - 7880571
Alignment:
| Q |
386 |
atgcgaaagaagttagctttgcttcttctcatgctccacatatgtgaatcaacatc |
441 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
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|
| T |
7880516 |
atgcgaaagaagttagcattgcttcttctcatgctcagtatattggaatcaacatc |
7880571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 2814 - 2968
Alignment:
| Q |
29 |
ccaacaacggtttgaatccttcccgcaacacttctaagcctatcatacctcattcttaccacatcatgtggtttagaacttggaaatgtgtcaaactctt |
128 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||| || |||||||||| |
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| T |
2814 |
ccaaccacagtttgtattcttcctgcaacacttctaagcctatcatacctcattcttatcacatcttgtgctttagaggttggaaaagtatcaaactctt |
2913 |
T |
|
| Q |
129 |
cgtcgagttcgtctggattagctccttcggcccatgagagtttagtatccatgtg |
183 |
Q |
| |
|
| || ||||| || |||| ||| |||| ||||| || | ||| ||||||||||| |
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|
| T |
2914 |
catctagttcatcaggatgtgctgcttcagcccaagaaatttttgtatccatgtg |
2968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 401 - 513
Target Start/End: Original strand, 3186 - 3298
Alignment:
| Q |
401 |
gctttgcttcttctcatgctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcctaagaggaggttcggctctacctagcctcatag |
500 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||| ||||| | ||||||||||||| | |||||||||||||| ||||| ||||| |||||||||| | |
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| T |
3186 |
gctttgcttcttcttaaactccatatatgtgaatccacatcaagcatgtactcaactacttctttcctaagaggtggttctgctcttcctagcctcactg |
3285 |
T |
|
| Q |
501 |
ctacgatattcat |
513 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3286 |
ctacgatattcat |
3298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 13227 - 13297
Alignment:
| Q |
392 |
aagaagttagctttgcttcttctcatgctccacatatgtgaatcaacatctaacatgtactcaactgcctc |
462 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||| || ||| ||||||| | ||| ||||||||| |||| |
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|
| T |
13227 |
aagaaattagccttgcttcttctcatactccacatgtgggaaccaacatcaagcatatactcaactacctc |
13297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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