View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_50 (Length: 242)
Name: NF20226_low_50
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30767960 - 30767722
Alignment:
| Q |
1 |
aaaagcttcaaacttatgaatatcaagctaacatcacaaatttgttatatacataaacaaacaagccaagcaaatcaatcatnnnnnnncataatagtga |
100 |
Q |
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| T |
30767960 |
aaaagcttcagacttatgaatatcaagctaacatcagaaatttgttatatacataaacaaacaagccaagcaaatcaatc-ttaaaaaacataatagtga |
30767862 |
T |
|
| Q |
101 |
ttacttgttggagaggtaacgtatcaaataagagtaggaaaaaattgaacgaaaaagtagtacaggatatgtaaatatgagagtttatttaggcagaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30767861 |
ttacttgttggagaggtaacgtatcaaataagagtagcaaaaaattgaaccaaaaagtagtacaggatatgtaaatatgagagtttatttaggcagaaaa |
30767762 |
T |
|
| Q |
201 |
gaatattaatattaaaccttgtttgtgaacggctcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
30767761 |
gaatattaatattaaaccttgtttgtgaacggctcctatg |
30767722 |
T |
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