View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20226_low_52 (Length: 238)

Name: NF20226_low_52
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20226_low_52
NF20226_low_52
[»] chr5 (17 HSPs)
chr5 (18-238)||(28807239-28807459)
chr5 (18-238)||(37561110-37561330)
chr5 (18-238)||(33791519-33791740)
chr5 (18-238)||(37556288-37556508)
chr5 (18-238)||(2785578-2785799)
chr5 (18-238)||(33768387-33768608)
chr5 (18-235)||(31396656-31396873)
chr5 (18-235)||(31401513-31401730)
chr5 (97-238)||(15044976-15045117)
chr5 (120-238)||(31180568-31180686)
chr5 (119-238)||(1456801-1456920)
chr5 (119-238)||(27445285-27445403)
chr5 (119-238)||(27450128-27450246)
chr5 (119-238)||(43592591-43592709)
chr5 (119-238)||(43599036-43599154)
chr5 (119-238)||(43604528-43604646)
chr5 (119-238)||(43610020-43610138)
[»] chr1 (10 HSPs)
chr1 (18-238)||(39445699-39445919)
chr1 (18-238)||(1054677-1054897)
chr1 (18-238)||(25439562-25439781)
chr1 (18-238)||(25444755-25444974)
chr1 (18-238)||(44023540-44023759)
chr1 (18-238)||(43988112-43988344)
chr1 (115-238)||(41390900-41391023)
chr1 (115-231)||(41398555-41398671)
chr1 (115-197)||(24787030-24787110)
chr1 (126-197)||(24793852-24793921)
[»] chr4 (12 HSPs)
chr4 (18-238)||(5732864-5733083)
chr4 (18-238)||(45347480-45347701)
chr4 (18-238)||(45356961-45357181)
chr4 (18-238)||(18855926-18856146)
chr4 (18-238)||(3814223-3814443)
chr4 (97-238)||(9228849-9228990)
chr4 (97-238)||(9224062-9224203)
chr4 (115-238)||(18712418-18712541)
chr4 (116-238)||(56141675-56141797)
chr4 (125-231)||(24742302-24742407)
chr4 (119-238)||(51520769-51520887)
chr4 (125-178)||(29761002-29761055)
[»] chr6 (11 HSPs)
chr6 (18-238)||(6438700-6438920)
chr6 (18-238)||(28155234-28155455)
chr6 (18-238)||(6005620-6005843)
chr6 (18-238)||(16838947-16839167)
chr6 (18-238)||(33330096-33330327)
chr6 (18-238)||(33335593-33335824)
chr6 (18-238)||(5343680-5343901)
chr6 (118-238)||(14737229-14737349)
chr6 (118-238)||(14742089-14742209)
chr6 (97-238)||(22010352-22010493)
chr6 (119-232)||(11857286-11857398)
[»] chr8 (13 HSPs)
chr8 (18-238)||(39784488-39784708)
chr8 (18-238)||(35745594-35745815)
chr8 (18-238)||(25327827-25328037)
chr8 (18-238)||(10683902-10684146)
chr8 (116-202)||(7289627-7289713)
chr8 (117-238)||(6311651-6311772)
chr8 (115-238)||(18852790-18852912)
chr8 (115-197)||(4759739-4759819)
chr8 (115-201)||(18870222-18870306)
chr8 (115-197)||(30655997-30656077)
chr8 (116-238)||(10688762-10688884)
chr8 (18-99)||(25328082-25328163)
chr8 (115-150)||(33037518-33037553)
[»] chr2 (7 HSPs)
chr2 (18-238)||(19344625-19344846)
chr2 (18-238)||(32246988-32247210)
chr2 (18-238)||(19349483-19349704)
chr2 (115-238)||(39811640-39811763)
chr2 (125-197)||(14291850-14291920)
chr2 (125-197)||(11098592-11098662)
chr2 (118-197)||(9296067-9296144)
[»] scaffold0464 (1 HSPs)
scaffold0464 (18-238)||(562-782)
[»] scaffold0197 (2 HSPs)
scaffold0197 (18-238)||(18827-19047)
scaffold0197 (18-238)||(13947-14191)
[»] chr7 (14 HSPs)
chr7 (21-238)||(21811902-21812119)
chr7 (22-235)||(16880280-16880494)
chr7 (18-235)||(16885132-16885349)
chr7 (18-238)||(24260984-24261205)
chr7 (18-238)||(24265840-24266084)
chr7 (115-238)||(24023982-24024103)
chr7 (100-232)||(31109240-31109372)
chr7 (97-238)||(4873417-4873558)
chr7 (21-101)||(19992517-19992597)
chr7 (97-238)||(12397200-12397342)
chr7 (137-238)||(12406593-12406694)
chr7 (120-178)||(20357231-20357289)
chr7 (125-197)||(2058330-2058400)
chr7 (127-197)||(1533109-1533177)
[»] chr3 (18 HSPs)
chr3 (18-238)||(18656634-18656865)
chr3 (18-238)||(2672582-2672813)
chr3 (18-236)||(2676740-2676969)
chr3 (18-238)||(32475687-32475908)
chr3 (18-235)||(24968310-24968538)
chr3 (18-238)||(32480545-32480766)
chr3 (18-238)||(8512420-8512664)
chr3 (18-238)||(8517300-8517544)
chr3 (115-238)||(28503482-28503605)
chr3 (115-238)||(28501315-28501438)
chr3 (114-181)||(22172901-22172968)
chr3 (115-197)||(8738728-8738808)
chr3 (115-197)||(9090966-9091046)
chr3 (162-236)||(22172827-22172900)
chr3 (125-231)||(40372426-40372531)
chr3 (125-238)||(7167607-7167719)
chr3 (125-237)||(27352245-27352356)
chr3 (125-178)||(2671268-2671321)
[»] scaffold0259 (1 HSPs)
scaffold0259 (18-235)||(1905-2133)
[»] scaffold0028 (1 HSPs)
scaffold0028 (18-235)||(148610-148838)
[»] scaffold0135 (1 HSPs)
scaffold0135 (97-238)||(34717-34858)
[»] scaffold0355 (1 HSPs)
scaffold0355 (119-231)||(3507-3619)
[»] scaffold0009 (2 HSPs)
scaffold0009 (114-238)||(176613-176737)
scaffold0009 (18-96)||(176781-176859)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 28807459 - 28807239
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  28807459 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttttctctcttaagctctcttaaggttctctt 28807360  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28807359 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgagttccctagatcgtgtcacgatctgcaacggtccccaggttg 28807260  T
Q  218 accaatccttatcagagatac 238  Q
    |||| ||||||||||||||||    
T  28807259 accagtccttatcagagatac 28807239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 37561330 - 37561110
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||    
T  37561330 tttcccaacctaagaaacactcacatcaaaggaacacaccccataggatcccctctttgatctccaagttttctctcttaagccatcttaaggttctctt 37561231  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  37561230 caaaaaagcacaagaacacaatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcatgtcacgatctgcaacggtccccaggtta 37561131  T
Q  218 accaatccttatcagagatac 238  Q
    |||| ||||||||||||||||    
T  37561130 accagtccttatcagagatac 37561110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 33791519 - 33791740
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccc-tctttgatctccaaattttctctcttaagctctcttaaggttgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||    
T  33791519 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatct 33791618  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
     ||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33791619 ccaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 33791718  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  33791719 gaccagtccttatcagagatac 33791740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 37556508 - 37556288
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||    
T  37556508 tttcccaacctaagaaacactcacatcaaaggaacacaccccataggatcccctctttgatctccaagttttctctcttaagccatcttaaggttctctt 37556409  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||     
T  37556408 caaaaaagcacaagaacacaatatatactagtcctgccctgaagaaatcgtgccatgatttccctagatcgtgtcacgatctgcaacggtcctctggtta 37556309  T
Q  218 accaatccttatcagagatac 238  Q
    |||| ||||||||||||||||    
T  37556308 accagtccttatcagagatac 37556288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 2785578 - 2785799
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccc-tctttgatctccaaattttctctcttaagctctcttaaggttgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||    
T  2785578 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatct 2785677  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
     ||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2785678 ccaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgctccccaggtt 2785777  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  2785778 gaccagtccttatcagagatac 2785799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 33768387 - 33768608
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccc-tctttgatctccaaattttctctcttaagctctcttaaggttgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||    
T  33768387 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatct 33768486  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
     ||||||||||||||||||   || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33768487 ccaaaaaagcacaagaacactttaaatactagtcatgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 33768586  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  33768587 gaccagtccttatcagagatac 33768608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 31396873 - 31396656
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  31396873 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccatctttgatctccaagttttctctcttaagctctctcaaggttgtctt 31396774  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    ||||||||||||||||||   || |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  31396773 caaaaaagcacaagaacactttaaatacaagtcctgccctgaagaaatcgtgtcacgattaccctagatcgtgtcacgatctgcaacggtccccaggttg 31396674  T
Q  218 accaatccttatcagaga 235  Q
    |||| |||||||||||||    
T  31396673 accagtccttatcagaga 31396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 31401730 - 31401513
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||    
T  31401730 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccatctttgatctccaagttttgtctcttaagctctctcaaggttgtctt 31401631  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    ||||||||||||||||||   || |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  31401630 caaaaaagcacaagaacactttaaatacaagtcctgccctgaagaaatcgtgtcacgattaccctagatcgtgtcacgatctgcaacggtccccaggttg 31401531  T
Q  218 accaatccttatcagaga 235  Q
    |||| |||||||||||||    
T  31401530 accagtccttatcagaga 31401513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 15044976 - 15045117
Alignment:
Q  97 aagctctcttaaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 196  Q
    ||||||||||||| |  |||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  15044976 aagctctcttaagttcttcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 15045075  T
Q  197 tctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    |||||||||| |||||||||||||| |||||||||| |||||    
T  15045076 tctgcaacggaccccaggttgaccagtccttatcagtgatac 15045117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 31180568 - 31180686
Alignment:
Q  120 aaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgac 219  Q
    |||||||||||||||| |||||||||||||| | | |||||| ||||||||||||||||||| ||||| ||||||||| |||  | | ||| ||||||||    
T  31180568 aaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcccaagatcatgtcacgatttgcgtctgacccaaggttgac 31180667  T
Q  220 caatccttatcagagatac 238  Q
    || |||||||||| |||||    
T  31180668 cagtccttatcagtgatac 31180686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 1456920 - 1456801
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    ||||||||||||||||| |||||||||||||| | | || ||||||||||||||||||||||| ||| ||||||||||| |||| | | ||| |||| ||    
T  1456920 aaaaaagcacaagaacacaatatatactagtcttcctctaaagaaatcgtgccacgatttcccaagaccgtgtcacgatttgcatctgacccaaggtaga 1456821  T
Q  219 ccaatccttatcagagatac 238  Q
    | | |||||||||| |||||    
T  1456820 caagtccttatcagggatac 1456801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 27445285 - 27445403
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    ||||||||||||||||| |||||||||||| | | | |||||| ||||||||||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  27445285 aaaaaagcacaagaacacaatatatactagccttcctctgaagcaatcgtgccacgatttccc-aaatcgtgtcacgatttgcgtctgacccaaggtaga 27445383  T
Q  219 ccaatccttatcagagatac 238  Q
    ||| |||||||||| |||||    
T  27445384 ccagtccttatcagggatac 27445403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 27450128 - 27450246
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    ||||||||||||||||| |||||||||||| | | | |||||| ||||||||||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  27450128 aaaaaagcacaagaacacaatatatactagccttcctctgaagcaatcgtgccacgatttccc-aaatcgtgtcacgatttgcgtctgacccaaggtaga 27450226  T
Q  219 ccaatccttatcagagatac 238  Q
    ||| |||||||||| |||||    
T  27450227 ccagtccttatcagggatac 27450246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 43592591 - 43592709
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    ||||||||||||||||| |||||||||||| | | | | |||| ||||||| ||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  43592591 aaaaaagcacaagaacacaatatatactagccttcctccgaagcaatcgtgtcacgatttccc-aaatcgtgtcacgatttgcgtctgacccaaggtaga 43592689  T
Q  219 ccaatccttatcagagatac 238  Q
    ||| |||||||||| |||||    
T  43592690 ccagtccttatcagggatac 43592709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 43599036 - 43599154
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    |||||| |||||||||| |||||||||||| | | | |||||| ||||||| ||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  43599036 aaaaaaacacaagaacacaatatatactagccttcctctgaagcaatcgtgtcacgatttccc-aaatcgtgtcacgatttgcgtctgacccaaggtaga 43599134  T
Q  219 ccaatccttatcagagatac 238  Q
    ||| |||||||||| |||||    
T  43599135 ccagtccttatcagggatac 43599154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 43604528 - 43604646
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    |||||| |||||||||| |||||||||||| | | | |||||| ||||||| ||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  43604528 aaaaaaacacaagaacacaatatatactagccttcctctgaagcaatcgtgtcacgatttccc-aaatcgtgtcacgatttgcgtctgacccaaggtaga 43604626  T
Q  219 ccaatccttatcagagatac 238  Q
    ||| |||||||||| |||||    
T  43604627 ccagtccttatcagggatac 43604646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 43610020 - 43610138
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    |||||| |||||||||| |||||||||||| | | | |||||| ||||||| ||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  43610020 aaaaaaacacaagaacacaatatatactagccttcctctgaagcaatcgtgtcacgatttccc-aaatcgtgtcacgatttgcgtctgacccaaggtaga 43610118  T
Q  219 ccaatccttatcagagatac 238  Q
    ||| |||||||||| |||||    
T  43610119 ccagtccttatcagggatac 43610138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 39445699 - 39445919
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  39445699 tttcccaacctaagaaactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtctt 39445798  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445799 caaaaaagcacaagaacacaatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 39445898  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  39445899 accagtccttatcagtgatac 39445919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1054897 - 1054677
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  1054897 tttcccaacctaagaaactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtctt 1054798  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  1054797 caaaaaagcacaagaacacaatatatactagtcctcccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggttcccaggttg 1054698  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  1054697 accagtccttatcagtgatac 1054677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 25439781 - 25439562
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  25439781 tttcccaacctaagaaactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtctt 25439682  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25439681 caaaaa-gcacaagaacacaataaatactagtcctcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacagtccccaggttg 25439583  T
Q  218 accaatccttatcagagatac 238  Q
    |||| ||||||||||||||||    
T  25439582 accagtccttatcagagatac 25439562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 25444974 - 25444755
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  25444974 tttcccaacctaagaaactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtctt 25444875  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25444874 caaaaa-gcacaagaacacaataaatactagtcctcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccctaggttg 25444776  T
Q  218 accaatccttatcagagatac 238  Q
    |||| ||||||||||||||||    
T  25444775 accagtccttatcagagatac 25444755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 44023759 - 44023540
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| || |    
T  44023759 tttcccaacctaagaaactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttatcct 44023660  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||| ||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44023659 caaaaa-gcacaagaacacaatatataccagtcctcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 44023561  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  44023560 accagtccttatcagtgatac 44023540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 43988344 - 43988112
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  43988344 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttttctctcttaagttctctcaaggttgtctt 43988245  T
Q  118 -----------caaaaaa-gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacg 205  Q
               ||||||| |||||||| ||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43988244 aaggttatctccaaaaaatgcacaagagcactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatatgcaacg 43988145  T
Q  206 gtccccaggttgaccaatccttatcagagatac 238  Q
    ||||||| |||||||| ||||||||||||||||    
T  43988144 gtccccaagttgaccagtccttatcagagatac 43988112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 41390900 - 41391023
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  41390900 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcagcggaccccagg 41390999  T
Q  215 ttgaccaatccttatcagagatac 238  Q
    ||||||| |||||||||| |||||    
T  41391000 ttgaccagtccttatcagtgatac 41391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 41398555 - 41398671
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  41398555 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcagcggaccccagg 41398654  T
Q  215 ttgaccaatccttatca 231  Q
    ||||||| |||||||||    
T  41398655 ttgaccagtccttatca 41398671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 24787110 - 24787030
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    ||||||||||||||||||||| |||||||||||||| | | |||||| ||||||||||||||||||  |||||||||||||||    
T  24787110 cttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgat 24787030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 24793921 - 24793852
Alignment:
Q  126 cacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    |||||||||| |||||||||||||| | | |||||| ||||||||||||||||||  |||||||||||||||    
T  24793921 cacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgat 24793852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 5732864 - 5733083
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5732864 tttcccaacctaagaaacactctcatcaaaggcacacaccccataggatcccctctttgatctccaagttttctctcttaagctctcttaaggttgtctt 5732963  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5732964 caaaaaa-cacaagaacacaatatatactagtcctcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 5733062  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  5733063 accagtccttatcagtgatac 5733083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 45347701 - 45347480
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaa-attttctctcttaagctctcttaaggttgtct 116  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45347701 tttcccaacctaagagacactctcatcaaaggcacacaccccataggatcccctctttgatctccaagattttctctcttaagctctcttaaggttgtct 45347602  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
    ||||||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45347601 tcaaaaaagcacaagaacacaatatatactagttttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggttcccaggtt 45347502  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| |||||||||| |||||    
T  45347501 gaccagtccttatcagtgatac 45347480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 45357181 - 45356961
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  45357181 tttcccaacctaagaaactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtctt 45357082  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  45357081 caaaaaagcacaagaacacaatatatactagtcctccccagaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggttcccaggttg 45356982  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  45356981 accagtccttatcagtgatac 45356961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 18855926 - 18856146
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  18855926 tttcccaacctaagaaactctctcatcaaaggcaaacaccccataggctcccctctttgatctccaagatttctctcttaagctctcttaaggttgtctt 18856025  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  18856026 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcatgtcacgatctgcaacggttcccaggttg 18856125  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  18856126 accagtccttatcagtgatac 18856146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 3814223 - 3814443
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||  ||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  3814223 tttcccaacctaagaaacactctcatcaaagacacacaccccataggatccctcctttgatgtccaagttttctctcttaagctctcctaaggttgtctt 3814322  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||    
T  3814323 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgtcacgatttccctagatcttgtcacgatctgcaacggttctcaggttg 3814422  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  3814423 accagtccttatcagtgatac 3814443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 9228990 - 9228849
Alignment:
Q  97 aagctctcttaaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 196  Q
    ||||||||||||| ||  ||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||    
T  9228990 aagctctcttaagattcacttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccctagatcgtgtcacga 9228891  T
Q  197 tctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    |||||||||| ||| |||| ||| | |||||||||| |||||    
T  9228890 tctgcaacggacccaaggtagacaagtccttatcagtgatac 9228849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 9224203 - 9224062
Alignment:
Q  97 aagctctcttaaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 196  Q
    ||||||||||||| ||  ||||||||||||| ||||||| |||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||    
T  9224203 aagctctcttaagattcacttcaaaaaagcagaagaacacaatatatactagtcttcctctgaagaaattgtgccacgatttccctagatcgtgtcacga 9224104  T
Q  197 tctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    |||||||||| ||| |||| ||| | |||||||||| |||||    
T  9224103 tctgcaacggacccaaggtagacaagtccttatcagtgatac 9224062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 18712541 - 18712418
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||| |||    
T  18712541 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgattttcctagattgtgtcacgatcttcaacggacccaagg 18712442  T
Q  215 ttgaccaatccttatcagagatac 238  Q
    ||||| | |||||||||| |||||    
T  18712441 ttgacaagtccttatcagtgatac 18712418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 56141797 - 56141675
Alignment:
Q  116 ttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt 215  Q
    |||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||| |||| | | ||| ||||    
T  56141797 ttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttcccaagatcgtgtcacgatttgcatctgacccaaggt 56141698  T
Q  216 tgaccaatccttatcagagatac 238  Q
     ||||| |||||||||| |||||    
T  56141697 agaccagtccttatcagggatac 56141675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 24742302 - 24742407
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccaat 223  Q
    ||||||||||| |||||||||||||| | | |||||||||||||| ||||||||||  |||||||| |||||| |||  | || ||||||| |||||| |    
T  24742302 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgatttcc--agatcgtggcacgatttgcgtccgttcccaggtatgaccagt 24742399  T
Q  224 ccttatca 231  Q
    ||||||||    
T  24742400 ccttatca 24742407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 51520769 - 51520887
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    ||||||||||||||||| |||||||||||| | | | |||||| ||| ||||||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  51520769 aaaaaagcacaagaacacaatatatactagccttcctctgaagcaattgtgccacgatttccc-aaatcgtgtcacgatttgcgtctgacccaaggtaga 51520867  T
Q  219 ccaatccttatcagagatac 238  Q
     || |||||||||| |||||    
T  51520868 tcagtccttatcagggatac 51520887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 29761002 - 29761055
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgattt 178  Q
    ||||||||||| |||||||||||||| | | |||||||||||||||||||||||    
T  29761002 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgattt 29761055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6438700 - 6438920
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  6438700 tttcccaacctaagaaactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtctt 6438799  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  6438800 caaaaaagcacaagaacacaatatatactagtccttccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggttcccaggttg 6438899  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  6438900 accagtccttatcagtgatac 6438920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 28155455 - 28155234
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||    
T  28155455 tttcccaacctaagaaacactctcatcaaaggcacacaccccataggatcccctctttgatctccaagttttctctcttaagttctcttaaggttttttt 28155356  T
Q  118 -caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
     |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28155355 tcaaaaaagcacaagaacacaatatatactagtcctcccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 28155256  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  28155255 gaccagtccttatcagagatac 28155234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6005620 - 6005843
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccc-tctttgatctccaaattttctctcttaagctctcttaaggttgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |    
T  6005620 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggtttttt 6005719  T
Q  117 tc--aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    ||  |||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6005720 tccaaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 6005819  T
Q  215 ttgaccaatccttatcagagatac 238  Q
    ||||||| ||||||||||||||||    
T  6005820 ttgaccagtccttatcagagatac 6005843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 16838947 - 16839167
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||| |||     
T  16838947 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccatctttgatctccaagttttctctcttaagctctctcaaggttctctc 16839046  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  16839047 caaaaaagcacaagaacactttatatactagtcctgccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggtcccaaggttg 16839146  T
Q  218 accaatccttatcagagatac 238  Q
    |||| ||||||||||||||||    
T  16839147 accagtccttatcagagatac 16839167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 33330327 - 33330096
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctct-----------t 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||           |    
T  33330327 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttttctctcttaagttctctcaaggttgtctt 33330228  T
Q  107 aaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 206  Q
    |||||||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33330227 aaggttgtcttcaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 33330128  T
Q  207 tccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||| ||||||||||||||||    
T  33330127 tccccaggttgaccagtccttatcagagatac 33330096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 33335824 - 33335593
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctct-----------t 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||           |    
T  33335824 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttttctctcttaagttctctcaaggttgtctt 33335725  T
Q  107 aaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 206  Q
    ||||||||||||||||||||||| |||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33335724 aaggttgtcttcaaaaaagcacatgaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 33335625  T
Q  207 tccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||| ||||||||||||||||    
T  33335624 tccccaggttgaccagtccttatcagagatac 33335593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 5343680 - 5343901
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtc-t 116  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||| ||||| ||||||  | |    
T  5343680 tttcccaacctaagattcactctcatcaaaggaacacaccccaaaggatcccatctttgatatccaagttttctctcttaagttctctcaaggttaacct 5343779  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
    |||||  ||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  5343780 tcaaatgagcacaagaacactttatatactagtccagccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatatgcaacggtccccaagtt 5343879  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  5343880 gaccagtccttatcagagatac 5343901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 14737349 - 14737229
Alignment:
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  14737349 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggacccaaggttg 14737250  T
Q  218 accaatccttatcagagatac 238  Q
    || | |||||||||| |||||    
T  14737249 acaagtccttatcagtgatac 14737229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 14742209 - 14742089
Alignment:
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  14742209 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccttagatcgtgtcacgatctgcaacggacccaaggttg 14742110  T
Q  218 accaatccttatcagagatac 238  Q
    || | |||||||||| |||||    
T  14742109 acaagtccttatcagtgatac 14742089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 22010493 - 22010352
Alignment:
Q  97 aagctctcttaaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 196  Q
    ||||||||||||| |  |||||||||||||||||||||| ||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||    
T  22010493 aagctctcttaagttcttcttcaaaaaagcacaagaacacaatatatactagtctccctctgaagaaatcgtgccacgatttccctagatcgtgtcacga 22010394  T
Q  197 tctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    | |||||||| ||| |||| ||| | |||||||||| |||||    
T  22010393 tttgcaacggacccaaggtagacaagtccttatcagtgatac 22010352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 11857286 - 11857398
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    ||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||| | ||||||||||||| |||||||| ||| |||||||    
T  11857286 aaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccc-aaatcgtgtcacgatttgcaacggacccaaggttga 11857384  T
Q  219 ccaatccttatcag 232  Q
    | | ||||||||||    
T  11857385 caagtccttatcag 11857398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 39784708 - 39784488
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  39784708 tttcccaacctaagagactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttctctt 39784609  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39784608 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 39784509  T
Q  218 accaatccttatcagagatac 238  Q
    |||| |||||||||| |||||    
T  39784508 accagtccttatcagtgatac 39784488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 35745594 - 35745815
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccc-tctttgatctccaaattttctctcttaagctctcttaaggttgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||    
T  35745594 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatct 35745693  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
     ||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745694 ccaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 35745793  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||| ||||||    
T  35745794 gaccagtccttatcatagatac 35745815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 25328037 - 25327827
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||| |||| |||||||||||||||  ||||| |||||||||||||  ||||||||||||| || ||||||||||| |||          ||||    
T  25328037 tttcccaacccaagagacactctcatcaaagacacacaacccataggatccctcctttgatctccaagttctctctcttaagttct----------tctt 25327948  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  25327947 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgagctgcaacggacccaaggttg 25327848  T
Q  218 accaatccttatcagagatac 238  Q
    || | |||||||||| |||||    
T  25327847 acaagtccttatcagtgatac 25327827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10684146 - 10683902
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctctt--aagctc---------tctt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||  || |||         ||||    
T  10684146 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttatctctcttccaacctctcaaggttgtctt 10684047  T
Q  107 aaggttgt-------------cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtca 193  Q
    ||||||||             |||||||| ||||||||||||   || |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  10684046 aaggttgtctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtca 10683947  T
Q  194 cgatctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  10683946 cgatctgcaacggtccccaagttgaccagtccttatcagagatac 10683902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 7289713 - 7289627
Alignment:
Q  116 ttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgca 202  Q
    |||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  7289713 ttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttcccaagatcgtgtcacgatttgca 7289627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 6311651 - 6311772
Alignment:
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
    ||||||||||||||||||| |||||||||||||| | | |||||||||| |||||||||||||||   ||||||||||||| |||| | | ||| |||||    
T  6311651 tcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaattgtgccacgatttcccacaatcgtgtcacgatttgcatctgacccaaggtt 6311750  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||| | ||||||| || |||||    
T  6311751 gacaagtccttattagtgatac 6311772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 18852912 - 18852790
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    ||||||||||||||||||||| |||||||||||||| | | |||||| ||||||||||||||||||  | |||||||||||||||||  | | ||| |||    
T  18852912 cttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcc--aaatcgtgtcacgatctgcgtctgacccaagg 18852815  T
Q  215 t-tgaccaatccttatcagagatac 238  Q
    | |||||| |||||||||| |||||    
T  18852814 tatgaccagtccttatcagtgatac 18852790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 4759819 - 4759739
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    ||||||| ||||||||||||| |||||||||||||| | | |||||||||||||| ||||||||||  |||||||||||||||    
T  4759819 cttcaaacaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgatttcc--agatcgtgtcacgat 4759739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 18870306 - 18870222
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgc 201  Q
    ||||||||||||||||||||| |||||||||||||| | | |||||| |||||||||||||||| |  | |||||||||||||||||    
T  18870306 cttcaaaaaagcacaagaacacaatatatactagtctttctctgaagcaatcgtgccacgattttc--aaatcgtgtcacgatctgc 18870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 30655997 - 30656077
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    |||||||||| |||||||||| |||||||||||||| | | |||||| ||||||||||||||||||  |||||||||||||||    
T  30655997 cttcaaaaaaacacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgat 30656077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 10688884 - 10688762
Alignment:
Q  116 ttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt 215  Q
    |||||||  ||||||||||| |||||||||||||| | | |||||||||| |||||||||||||||   ||||||||||||| |||| | | ||| ||||    
T  10688884 ttcaaaactgcacaagaacacaatatatactagtcttcctctgaagaaattgtgccacgatttcccacaatcgtgtcacgatttgcatctgacccaaggt 10688785  T
Q  216 tgaccaatccttatcagagatac 238  Q
    |||| | ||||||| || |||||    
T  10688784 tgacaagtccttattagtgatac 10688762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 25328163 - 25328082
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaag 99  Q
    |||||||||| |||| |||||||||||||||  ||||| |||||||||||||  ||||||||||||| || |||||||||||    
T  25328163 tttcccaacccaagagacactctcatcaaagacacacaacccataggatccctcctttgatctccaagttctctctcttaag 25328082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 33037553 - 33037518
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtc 150  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33037553 cttcaaaaaagcacaagaacacaatatatactagtc 33037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 19344625 - 19344846
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccc-tctttgatctccaaattttctctcttaagctctcttaaggttgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||    
T  19344625 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatct 19344724  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
     ||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19344725 ccaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcatgatctgcaacggtccccaggtt 19344824  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  19344825 gaccagtccttatcagagatac 19344846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 32246988 - 32247210
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  32246988 tttcccaacctaagaaacactctcatcaaaggcacacaccccataggaccccctctttgatctccaagttttctctcttaagttctcttaaggttatctt 32247087  T
Q  118 caaaaaa--gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt 215  Q
    |||||||  ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32247088 caaaaaaaggcacaagaacacaatatatactagtcctcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt 32247187  T
Q  216 tgaccaatccttatcagagatac 238  Q
    |||||| || ||||||| |||||    
T  32247188 tgaccagtctttatcagtgatac 32247210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 19349483 - 19349704
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccc-tctttgatctccaaattttctctcttaagctctcttaaggttgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||    
T  19349483 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatccccatctttgatctctaagttttctctcttaagctctcttaaggttatct 19349582  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
     ||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19349583 ccaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtcctcaggtt 19349682  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  19349683 gaccagtccttatcagagatac 19349704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 39811763 - 39811640
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    ||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  39811763 cttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggccccaagg 39811664  T
Q  215 ttgaccaatccttatcagagatac 238  Q
      ||| | |||||||||| |||||    
T  39811663 cagacaagtccttatcagtgatac 39811640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 14291850 - 14291920
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    ||||||||||| |||||||||||||| | | |||||||||||||||||||||||||  |||||||||||||||    
T  14291850 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttcc--agatcgtgtcacgat 14291920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 11098662 - 11098592
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    ||||||||||| ||||||| |||||| | | |||||||||||||||||||||||||  |||||||||||||||    
T  11098662 gcacaagaacacaatatatgctagtcttcctctgaagaaatcgtgccacgatttcc--agatcgtgtcacgat 11098592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 9296144 - 9296067
Alignment:
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    ||||||||||||||||||   || ||||||||| | | |||||| ||||||| |||||||| |  |||||||||||||||    
T  9296144 caaaaaagcacaagaacactttaaatactagtcttcctctgaagcaatcgtgtcacgattttc--agatcgtgtcacgat 9296067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 562 - 782
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  562 tttcccaacctaagaaactctctcatcaaaggcacacaccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtctt 661  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||  || | ||||    
T  662 caaaaaagcacaagaacacaatatataccagtcctcccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggaaccaaagttg 761  T
Q  218 accaatccttatcagagatac 238  Q
    |||| ||||||||||||||||    
T  762 accagtccttatcagagatac 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 19047 - 18827
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  19047 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatcccatctttgatctccaagttttctctcttaagttctctcaaggttgtctt 18948  T
Q  118 caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 217  Q
    ||||||||||||||||||   || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||    
T  18947 caaaaaagcacaagaacactttaaatattagtcctgccctgaagaaatcgtgccacgatttccttagatcgtgtcacgatttgcaacggtccccaggatg 18848  T
Q  218 accaatccttatcagagatac 238  Q
    |||| || |||||||||||||    
T  18847 accagtctttatcagagatac 18827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 14191 - 13947
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctctt--aagctc---------tctt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||  || |||         ||||    
T  14191 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttatctctcttccaacctctcaaggttgtctt 14092  T
Q  107 aaggttgt-------------cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtca 193  Q
    ||||||||             |||||||| ||||||||||||   || |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  14091 aaggttgtctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtca 13992  T
Q  194 cgatctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  13991 cgatctgcaacggtccccaagttgaccagtccttatcagagatac 13947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 21812119 - 21811902
Alignment:
Q  21 cccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtcttcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||| ||||||||||||  ||||||    
T  21812119 cccaacctaagaaacactctcatcaaaggaacacaccccaaaggatcccctctttgacctccaagctttctctcttaagttctcttaaggttagcttcaa 21812020  T
Q  121 aaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgacc 220  Q
    ||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||||    
T  21812019 aaaagcacaagaacacaatatatactagtcctgccctgagtaaatcgtgccacgatttcccaagatcgtgacacaatctgcaacggtctccaggttgacc 21811920  T
Q  221 aatccttatcagagatac 238  Q
    | ||||||||||||||||    
T  21811919 agtccttatcagagatac 21811902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 16880280 - 16880494
Alignment:
Q  22 ccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtc-ttcaa 120  Q
    |||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||| ||||||  | |||||    
T  16880280 ccaacctaagattcactctcatcaaaggaacacaccccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaaccttcaa 16880379  T
Q  121 aaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgacc 220  Q
    |  ||||||||||||   || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16880380 atgagcacaagaacactttaaatactagtcctgcccagaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgacc 16880479  T
Q  221 aatccttatcagaga 235  Q
    | |||||||||||||    
T  16880480 agtccttatcagaga 16880494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 16885132 - 16885349
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtc-t 116  Q
    |||||||||||||||  |||||||||||||||||||||||| | |||||||| |||||||||||||| ||| |||||||||| ||||| ||||||  | |    
T  16885132 tttcccaacctaagattcactctcatcaaaggaacacacccaa-aggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaacct 16885230  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
    |||||  ||||||||||||   || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16885231 tcaaatgagcacaagaacactttaaatactagtcctgcccagaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 16885330  T
Q  217 gaccaatccttatcagaga 235  Q
    ||||| |||||||||||||    
T  16885331 gaccagtccttatcagaga 16885349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 24261205 - 24260984
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtc-t 116  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||| ||||||  | |    
T  24261205 tttcccaacctaagattcactctcatcaaaggaacacaccccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaacct 24261106  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
    |||||  ||||||||||||   || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| || |||    
T  24261105 tcaaatgagcacaagaacactttaaatactagtcctgtcctgatgaaatcgtgccacgatttccctagatcgtgtcacgattttcaacggtcctcaagtt 24261006  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  24261005 gaccagtccttatcagagatac 24260984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 24266084 - 24265840
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctctt--aagctc---------tctt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||  || |||         ||||    
T  24266084 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttatctctcttccaacctctcaaggttgtctt 24265985  T
Q  107 aaggttgt-------------cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtca 193  Q
    ||||||||             |||||||| ||||||||||||   || |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  24265984 aaggttgtctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtca 24265885  T
Q  194 cgatctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  24265884 cgatctgcaacggtccccaagttgaccagtccttatcagagatac 24265840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 24024103 - 24023982
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    |||||||||||||||||||||   |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024103 cttcaaaaaagcacaagaacac--tatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 24024006  T
Q  215 ttgaccaatccttatcagagatac 238  Q
    ||||||| |||||||||| |||||    
T  24024005 ttgaccagtccttatcagtgatac 24023982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 31109372 - 31109240
Alignment:
Q  100 ctctcttaaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatct 199  Q
    |||||||||| || |||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  31109372 ctctcttaagtttatcttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccctagatcgtgtcacgatct 31109273  T
Q  200 gcaacggtccccaggttgaccaatccttatcag 232  Q
    ||||||| ||| |||  ||| | ||||||||||    
T  31109272 gcaacggccccaaggcagacaagtccttatcag 31109240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 4873417 - 4873558
Alignment:
Q  97 aagctctcttaaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 196  Q
    ||||||||||||| |  |||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||    
T  4873417 aagctctcttaagttcttcttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccctagatcgtgtcacga 4873516  T
Q  197 tctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    | |||||||| ||| |||  ||| | |||||||||| |||||    
T  4873517 tttgcaacggacccaaggaagacaagtccttatcagtgatac 4873558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 19992517 - 19992597
Alignment:
Q  21 cccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagct 101  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  19992517 cccaacctaagaaacactcacatcaaaggaacacaccccataggatcccctctttgacctccaagttttctctcttaagct 19992597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 12397200 - 12397342
Alignment:
Q  97 aagctctcttaaggttgtcttcaaaaaag-cacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacg 195  Q
    ||||||||||||| |  |||||||||||| |||||||||| |||||||||||||  | | |||||||||||||||||||||||||| | |||||||||||    
T  12397200 aagctctcttaagttcttcttcaaaaaaggcacaagaacacaatatatactagtattcctctgaagaaatcgtgccacgatttccccaaatcgtgtcacg 12397299  T
Q  196 atctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    || |||||||| ||| |||| ||| | |||||||||| |||||    
T  12397300 atttgcaacggacccaaggtagacaagtccttatcagtgatac 12397342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 12406593 - 12406694
Alignment:
Q  137 aatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccaatccttatcagagat 236  Q
    |||||||||||||| | | |||||||||||||||||||||||||| | ||||||||||||| |||||||| ||| |||| ||| | |||||||||| |||    
T  12406593 aatatatactagtcttcctctgaagaaatcgtgccacgatttccccaaatcgtgtcacgatttgcaacggacccaaggtagacaagtccttatcagtgat 12406692  T
Q  237 ac 238  Q
    ||    
T  12406693 ac 12406694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 20357289 - 20357231
Alignment:
Q  120 aaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgattt 178  Q
    |||||||||||||||| |||||||||||||| | | |||||| ||||||||||||||||    
T  20357289 aaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgattt 20357231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 2058330 - 2058400
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    ||||||||||| |||||||||||| | | | |||||| ||||||||||||||||||  |||||||||||||||    
T  2058330 gcacaagaacacaatatatactagccttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgat 2058400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 1533177 - 1533109
Alignment:
Q  127 acaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    |||||||||  ||||||||||| | | | |||||| ||||||||||||||||||  |||||||||||||||    
T  1533177 acaagaacactatatatactagccttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgat 1533109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 18656634 - 18656865
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctct-----------t 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||           |    
T  18656634 tttcccaacctaagaaacactctcatcaaaggcacacaccccataggatcccctctttgatctccaagttttctctcttaagttctctcaaggttgtctt 18656733  T
Q  107 aaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 206  Q
    |||||||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18656734 aaggttgtcttcaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 18656833  T
Q  207 tccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||| |||||||||| |||||    
T  18656834 tccccaggttgaccagtccttatcagtgatac 18656865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2672813 - 2672582
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||    
T  2672813 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatcccctctttgacctccaagttttctctcttaagttctctcaaggttgtctt 2672714  T
Q  118 -----------caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 206  Q
               ||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2672713 aaggttctcttcaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 2672614  T
Q  207 tccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||| ||||||||||||||||    
T  2672613 tccccaggttgaccagtccttatcagagatac 2672582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 2676969 - 2676740
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||    
T  2676969 tttcccaacctaagaaacactctcatcaaaggaacacaccccaaaggatcccctctttgacctccaagttttctctcttaagttctctcaaggttgtctt 2676870  T
Q  118 -----------caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 206  Q
               ||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2676869 aaggttctcttcaaaaaagcacaagaacactttaaatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 2676770  T
Q  207 tccccaggttgaccaatccttatcagagat 236  Q
    ||||||||||||||| ||||||||||||||    
T  2676769 tccccaggttgaccagtccttatcagagat 2676740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 32475687 - 32475908
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtc-t 116  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||| ||||||  | |    
T  32475687 tttcccaacctaagattcactctcatcaaaggaacacaccccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaacct 32475786  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
    |||||  ||||||||||||   || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |    
T  32475787 tcaaatgagcacaagaacactttaaatactagtcctgcccagaagaaatcgtgccacgatttccctagatcgtgtcacgatatgcaacggtccccaagat 32475886  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  32475887 gaccagtccttatcagagatac 32475908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 24968310 - 24968538
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtctt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||| |||||||    
T  24968310 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttatctctcttgagctctctcaagattgtctt 24968409  T
Q  118 -----------caaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 206  Q
               |||| |||||||||||||   || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  24968410 aagccccctttcaaataagcacaagaacactttaaatactagtcttgccctgaagaaatcgtgccacgatttccctagatcgtggcacgatttgcaacgg 24968509  T
Q  207 tccccaggttgaccaatccttatcagaga 235  Q
    ||||||||||||||| |||||||||||||    
T  24968510 tccccaggttgaccagtccttatcagaga 24968538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 32480545 - 32480766
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctcttaagctctcttaaggttgtc-t 116  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||| ||||||  | |    
T  32480545 tttcccaacctaagattcactctcatcaaaggaacacaccccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaacct 32480644  T
Q  117 tcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 216  Q
    |||||  ||||||||||||   || ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |    
T  32480645 tcaaatgagcacaagaacactttaaatactagtcctgcctagaagaaatcgtgccacgatttccctagatcgtgtcacgatatgcaacggtccccaagat 32480744  T
Q  217 gaccaatccttatcagagatac 238  Q
    ||||| ||||||||||||||||    
T  32480745 gaccagtccttatcagagatac 32480766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 8512420 - 8512664
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctctt--aagctc---------tctt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||  || |||         ||||    
T  8512420 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttatctctcttccaacctctcaaggttgtctt 8512519  T
Q  107 aaggttgt-------------cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtca 193  Q
    ||||||||             |||||||| ||||||||||||   || |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  8512520 aaggttgtctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtca 8512619  T
Q  194 cgatctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  8512620 cgatctgcaacggtccccaagttgaccagtccttatcagagatac 8512664  T

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Target: chr3; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 8517300 - 8517544
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctctt--aagctc---------tctt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||  || |||         ||||    
T  8517300 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttatctctcttccaacctctcaaggttgtctt 8517399  T
Q  107 aaggttgt-------------cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtca 193  Q
    ||||||||             |||||||| ||||||||||||   || |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  8517400 aaggttgtctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtca 8517499  T
Q  194 cgatctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  8517500 cgatctgcaacggtccccaagttgaccagtccttatcagagatac 8517544  T

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Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 28503605 - 28503482
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    ||||||||||||||||||||| |||||||||||||| | | |||||| ||||||||||||||||||| ||||||||||||||| |||  | | ||| |||    
T  28503605 cttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcccaagatcgtgtcacgatttgcgtctgacccaagg 28503506  T
Q  215 ttgaccaatccttatcagagatac 238  Q
    ||||| | |||||||||| |||||    
T  28503505 ttgacaagtccttatcagggatac 28503482  T

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Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 28501438 - 28501315
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 214  Q
    ||||||||||||||||| ||| |||||||||||||| | | |||||| ||||||||||||||||||| ||||||||||| ||| |||  | | ||| |||    
T  28501438 cttcaaaaaagcacaagtacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcccaagatcgtgtcatgatttgcgtctgacccaagg 28501339  T
Q  215 ttgaccaatccttatcagagatac 238  Q
    ||||| | |||||||||| |||||    
T  28501338 ttgacaagtccttatcagggatac 28501315  T

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Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 22172968 - 22172901
Alignment:
Q  114 tcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccc 181  Q
    |||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||    
T  22172968 tcttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccc 22172901  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 8738808 - 8738728
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    ||||||||||||||||||||| |||||||||||| | | | |||||| ||||||||||||||||||  ||||| |||||||||    
T  8738808 cttcaaaaaagcacaagaacacaatatatactagacttcctctgaagcaatcgtgccacgatttcc--agatcatgtcacgat 8738728  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 9091046 - 9090966
Alignment:
Q  115 cttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgat 197  Q
    ||||||||||||||||||||| |||||||||||| | | | |||||| ||||||||||||||||||  ||||| |||||||||    
T  9091046 cttcaaaaaagcacaagaacacaatatatactagacttcctctgaagcaatcgtgccacgatttcc--agatcatgtcacgat 9090966  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 22172900 - 22172827
Alignment:
Q  162 aaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccaatccttatcagagat 236  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||  || |||||||||| ||||||||||||||    
T  22172900 aaatcgtgccacgatttcccaa-atcgtgtcacgatttgcaacggaaccaaggttgaccagtccttatcagagat 22172827  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 40372531 - 40372426
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccaat 223  Q
    ||||||||||| |||||||||||||| | | |||||||||||||| ||||||||||  |||||||| |||||| |||  | || ||||||| |||||| |    
T  40372531 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgatttcc--agatcgtggcacgatttgcgtccgttcccaggtatgaccagt 40372434  T
Q  224 ccttatca 231  Q
    ||||||||    
T  40372433 ccttatca 40372426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 7167607 - 7167719
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccaat 223  Q
    ||||||||||| |||||||||||||| | | ||||||||||||||||| ||||| |  | ||||||||||||| |||  | | ||| |||| |||||| |    
T  7167607 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccatgattttc--aaatcgtgtcacgatttgcgtctgacccaaggtatgaccagt 7167704  T
Q  224 ccttatcagagatac 238  Q
    ||||||||| |||||    
T  7167705 ccttatcagtgatac 7167719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 27352356 - 27352245
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccaat 223  Q
    ||||||||||| |||||||| ||| | | | |||||| ||||||||||||||||||  | ||||||||||||| |||  | ||||| |||| |||||| |    
T  27352356 gcacaagaacacaatatatattagccttcctctgaagcaatcgtgccacgatttcc--aaatcgtgtcacgatttgcgtccgtcccaaggtatgaccagt 27352259  T
Q  224 ccttatcagagata 237  Q
    ||||||||| ||||    
T  27352258 ccttatcagtgata 27352245  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 2671321 - 2671268
Alignment:
Q  125 gcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgattt 178  Q
    ||||||||||| |||||||||||||| | | |||||||||||||| ||||||||    
T  2671321 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgattt 2671268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 2133 - 1905
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctctt--aagctctc---------tt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||| || || |||||  || |||||         ||    
T  2133 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctccttgacctccaagttatcactcttccaacctctcaaggttgtctt 2034  T
Q  107 aaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 206  Q
    ||||||  ||||||| |||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2033 aaggttaccttcaaataagcacaagaacactttatatactagtcctgccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacgg 1934  T
Q  207 tccccaggttgaccaatccttatcagaga 235  Q
    |||| |||||||||| |||||||||||||    
T  1933 tcccaaggttgaccagtccttatcagaga 1905  T

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Target: scaffold0028 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 148838 - 148610
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctctt--aagctctc---------tt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||| || || |||||  || |||||         ||    
T  148838 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctccttgacctccaagttatcactcttccaacctctcaaggttgtctt 148739  T
Q  107 aaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgg 206  Q
    ||||||  ||||||| |||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  148738 aaggttaccttcaaataagcacaagaacactttatatactagtcctgccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacgg 148639  T
Q  207 tccccaggttgaccaatccttatcagaga 235  Q
    |||| |||||||||| |||||||||||||    
T  148638 tcccaaggttgaccagtccttatcagaga 148610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 34858 - 34717
Alignment:
Q  97 aagctctcttaaggttgtcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 196  Q
    ||||||||||||| ||  ||||||||||||| ||||||| |||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||    
T  34858 aagctctcttaagattcacttcaaaaaagcaaaagaacacaatatatactagtcttcctctgaagaaatagtgccacgatttccctagatcgtgtcacga 34759  T
Q  197 tctgcaacggtccccaggttgaccaatccttatcagagatac 238  Q
    |||||||||| ||| |||| ||| | |||||||||| |||||    
T  34758 tctgcaacggacccaaggtagacaagtccttatcagtgatac 34717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 3619 - 3507
Alignment:
Q  119 aaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 218  Q
    ||||||||||||||| | |||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3619 aaaaaagcacaagaatacaatatatactagtcttcccctgaagaaatcgtgtcacgattttcctagatcgtgtcacgatctgcaacggtccccaggttga 3520  T
Q  219 ccaatccttatca 231  Q
    | | |||||||||    
T  3519 ctagtccttatca 3507  T

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Target: scaffold0009 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 176737 - 176613
Alignment:
Q  114 tcttcaaaaaagcacaagaacataatatatactagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccag 213  Q
    ||||||||| ||||||||||||   || |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |     
T  176737 tcttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggacccaaa 176638  T
Q  214 gttgaccaatccttatcagagatac 238  Q
    |||||||| ||||||||||||||||    
T  176637 gttgaccagtccttatcagagatac 176613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 176859 - 176781
Alignment:
Q  18 tttcccaacctaagaaacactctcatcaaaggaacacaccccataggatcccctctttgatctccaaattttctctctt 96  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  176859 tttcccaacctaagatacactctcatcaaaggaacacaccccaaaggatcccctctttgatctccaagttatctctctt 176781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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