View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_54 (Length: 237)
Name: NF20226_low_54
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3306902 - 3307122
Alignment:
| Q |
1 |
atttcccaaaatctaatttcgagaaattgacaaatttcaacatcaatgatatggaaaatattgaattgaaacttgatgatgaggttgaagttctactctt |
100 |
Q |
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| T |
3306902 |
atttcccaaaatctaatttcgagaaattgacaaatttcaacatcaatgatatggaaaatattgaattgaaacttgatgatgaggttgaagttctactctt |
3307001 |
T |
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| Q |
101 |
attgagttcgttgcctagatcttttgaacattttaaggatgcattcctttaaggaaaggaaaccattattgcctttgaggtggtccaatcatccattagg |
200 |
Q |
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| T |
3307002 |
attgagttcgttgcctagatcttttgaacattttaaggatgcattcctttaaggaaaggaaaccattattgcctttgaggtggtccaatcatccattagg |
3307101 |
T |
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| Q |
201 |
gccaaagagttaaccaagttt |
221 |
Q |
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| T |
3307102 |
gccaaagagttaaccaagttt |
3307122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 33834250 - 33834347
Alignment:
| Q |
94 |
tactcttattgagttcgttgcctagatcttttgaacattttaaggatgcattcctttaaggaaaggaaaccat-tattgcctttgaggtggtccaatc |
190 |
Q |
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| T |
33834250 |
tactcttgttgagtttgttacccaaatcttttgaacatttcaaggatgcacttctttatgaaaatgaatccatatattaccttggaggtggtccaatc |
33834347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 33912803 - 33912900
Alignment:
| Q |
94 |
tactcttattgagttcgttgcctagatcttttgaacattttaaggatgcattcctttaaggaaaggaaaccat-tattgcctttgaggtggtccaatc |
190 |
Q |
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| T |
33912803 |
tactcttgttgagtttgttacccaaatcttttgaacatttcaaggatgcacttctttatgaaaatgaatccatatattaccttggaggtggtccaatc |
33912900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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