View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_55 (Length: 235)
Name: NF20226_low_55
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39180290 - 39180511
Alignment:
| Q |
1 |
ttattttacttttgtattttcataaattaatttcaattgtactttaatagggaagataccacaactataataattctagttcaccttat--nnnnnnnnn |
98 |
Q |
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| T |
39180290 |
ttattttacttttgtattttcataaattaatttcaattgtactttaatagggaagatagcacaactatagtaattctagttcaccttataaaaaaaaaaa |
39180389 |
T |
|
| Q |
99 |
cactaaactaatatgcatctattaattagtaaatacataaaactcgagtcattttttgtgatgtgccacaannnnnnnnnccaggttgtttagtggttag |
198 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
39180390 |
cactaaactaatatgcatctattaattagtaaatatataaaactcgagtcattttttgtgatgtgtcacaatttttttttccaggttatttagtggttag |
39180489 |
T |
|
| Q |
199 |
aatttcacatctaaggtgaata |
220 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
39180490 |
aatttcacatctaaggtgaata |
39180511 |
T |
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