View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20226_low_57 (Length: 229)
Name: NF20226_low_57
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_57 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 43633107 - 43632888
Alignment:
| Q |
1 |
aaatattaccagaagaacatctaacagaaaagacagaaacttttgcagaggtgtgtggcggcgccttggaaccaaagaggtcattgaaagaaaaagtgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633107 |
aaatattaccagaagaacatctaacagaaaagacagaaacttttgcagaggtgtgtggcggcgccttggaaccaaagaggtcattgaaagaaaaagtgaa |
43633008 |
T |
|
| Q |
101 |
ggccaaggcttttgttgccattaatatgtttctttcttctcaatgaagctgagaacaacgttacacagagatatgtctgag-nnnnnnnnccaaaccagt |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43633007 |
ggccaaagcttttgttgccattaatatgtttctttcttctcaatgaagctgagaacaacgttacacagagatatgtctgagaaaaaaaaaccaaaccagt |
43632908 |
T |
|
| Q |
200 |
gttagcagcagcaacctatg |
219 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43632907 |
gttagcagcagcaacctatg |
43632888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University