View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20226_low_60 (Length: 213)

Name: NF20226_low_60
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20226_low_60
NF20226_low_60
[»] chr8 (17 HSPs)
chr8 (53-131)||(3845356-3845434)
chr8 (44-106)||(11543415-11543477)
chr8 (45-106)||(22312570-22312631)
chr8 (57-106)||(25294907-25294956)
chr8 (57-106)||(25756927-25756976)
chr8 (15-106)||(19332773-19332864)
chr8 (53-106)||(19332885-19332938)
chr8 (53-106)||(22312533-22312586)
chr8 (45-106)||(24238446-24238507)
chr8 (15-49)||(11543490-11543524)
chr8 (15-49)||(22312645-22312679)
chr8 (15-49)||(25294945-25294979)
chr8 (15-49)||(25756965-25756999)
chr8 (15-49)||(45560374-45560408)
chr8 (53-105)||(11543379-11543431)
chr8 (54-106)||(16000941-16000993)
chr8 (51-103)||(25756856-25756908)
[»] chr7 (16 HSPs)
chr7 (88-131)||(15979280-15979323)
chr7 (44-106)||(16369644-16369706)
chr7 (45-106)||(16369682-16369743)
chr7 (45-106)||(21676236-21676297)
chr7 (45-106)||(28719356-28719417)
chr7 (57-106)||(8564805-8564854)
chr7 (57-106)||(21676137-21676186)
chr7 (50-106)||(16369613-16369669)
chr7 (53-105)||(21676281-21676333)
chr7 (53-105)||(28719320-28719372)
chr7 (15-49)||(4483704-4483738)
chr7 (15-49)||(8564782-8564816)
chr7 (45-106)||(16382412-16382473)
chr7 (45-106)||(16382449-16382510)
chr7 (45-106)||(21676162-21676223)
chr7 (57-106)||(28719393-28719442)
[»] scaffold0005 (1 HSPs)
scaffold0005 (45-106)||(247158-247219)
[»] chr6 (17 HSPs)
chr6 (50-103)||(4172878-4172931)
chr6 (50-103)||(4228487-4228540)
chr6 (42-106)||(21930798-21930862)
chr6 (45-106)||(16135184-16135245)
chr6 (45-106)||(23220602-23220663)
chr6 (59-106)||(29161628-29161675)
chr6 (45-106)||(11374103-11374164)
chr6 (45-106)||(29161651-29161712)
chr6 (53-105)||(18104750-18104802)
chr6 (59-106)||(11374043-11374090)
chr6 (59-106)||(25650036-25650083)
chr6 (15-49)||(16135259-16135293)
chr6 (15-49)||(23220677-23220711)
chr6 (57-106)||(23220639-23220688)
chr6 (53-105)||(21930762-21930814)
chr6 (53-105)||(23220566-23220618)
chr6 (50-106)||(29161767-29161823)
[»] chr5 (5 HSPs)
chr5 (45-106)||(20455301-20455362)
chr5 (57-106)||(14342946-14342995)
chr5 (15-49)||(20455253-20455287)
chr5 (53-106)||(11964851-11964904)
chr5 (57-106)||(20455276-20455325)
[»] chr4 (10 HSPs)
chr4 (45-106)||(5371902-5371963)
chr4 (45-106)||(14570157-14570218)
chr4 (45-106)||(54364776-54364837)
chr4 (50-105)||(19082355-19082410)
chr4 (50-105)||(17376732-17376787)
chr4 (15-49)||(5371854-5371888)
chr4 (57-106)||(5371877-5371926)
chr4 (54-106)||(12134999-12135051)
chr4 (53-105)||(17376806-17376858)
chr4 (50-106)||(54364744-54364800)
[»] chr2 (9 HSPs)
chr2 (45-106)||(24562075-24562136)
chr2 (57-102)||(45618709-45618754)
chr2 (50-105)||(20272298-20272353)
chr2 (51-106)||(29113145-29113200)
chr2 (53-105)||(24562120-24562172)
chr2 (55-106)||(18534728-18534779)
chr2 (15-49)||(18534803-18534837)
chr2 (57-106)||(24562050-24562099)
chr2 (45-106)||(24840705-24840766)
[»] scaffold0317 (2 HSPs)
scaffold0317 (57-106)||(15030-15079)
scaffold0317 (45-106)||(15055-15116)
[»] scaffold0079 (4 HSPs)
scaffold0079 (45-106)||(5402-5463)
scaffold0079 (45-106)||(5328-5389)
scaffold0079 (53-105)||(5447-5499)
scaffold0079 (57-106)||(5303-5352)
[»] chr3 (8 HSPs)
chr3 (57-106)||(11401513-11401562)
chr3 (45-106)||(11401476-11401537)
chr3 (53-105)||(11401440-11401492)
chr3 (50-100)||(14968508-14968558)
chr3 (57-106)||(5229293-5229342)
chr3 (45-106)||(38377016-38377077)
chr3 (50-106)||(17759656-17759712)
chr3 (50-106)||(19060976-19061032)
[»] chr1 (4 HSPs)
chr1 (50-106)||(20821856-20821912)
chr1 (45-106)||(77247-77308)
chr1 (53-105)||(20821820-20821872)
chr1 (45-106)||(20821893-20821954)
[»] scaffold0231 (1 HSPs)
scaffold0231 (45-106)||(14171-14232)
[»] scaffold0090 (3 HSPs)
scaffold0090 (45-104)||(5848-5907)
scaffold0090 (57-105)||(1443-1491)
scaffold0090 (57-105)||(5823-5871)
[»] scaffold0084 (1 HSPs)
scaffold0084 (74-105)||(54963-54994)
[»] scaffold0468 (1 HSPs)
scaffold0468 (15-49)||(12249-12283)
[»] scaffold0183 (1 HSPs)
scaffold0183 (15-49)||(9787-9821)
[»] scaffold1204 (1 HSPs)
scaffold1204 (45-106)||(1427-1488)
[»] scaffold0017 (1 HSPs)
scaffold0017 (57-106)||(11519-11568)
[»] scaffold0009 (2 HSPs)
scaffold0009 (51-104)||(255650-255703)
scaffold0009 (50-106)||(98393-98448)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 3845356 - 3845434
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgtaaacatagttgatgttgagtaatgc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3845356 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgtaaacatagttgatgtttagtaatgc 3845434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 11543477 - 11543415
Alignment:
Q  44 tatatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||| |||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  11543477 tatattgttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 11543415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 22312631 - 22312570
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||||||||||||||  | ||||||| |||||||||||||||||    
T  22312631 atattgttggtgaatacatatatgtcaattgattgtaatattgtcggtgaatgcatatatgt 22312570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 25294956 - 25294907
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  25294956 aatgcatatatgttaattgatggtgatattgttggtgaatacatatatgt 25294907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 25756976 - 25756927
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  25756976 aatgcatatatgttaattgatggtgatattgttggtgaatacatatatgt 25756927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 19332773 - 19332864
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||||||||||||| ||    |||| |||||||||| |||||||||  ||||||   |||||||||||| ||| |||||||||    
T  19332773 atatgatatagttgatgttgattggttgtgatattgttggtgaatacatatatgttgattgattgagatattgttggtaaatacatatatgt 19332864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 19332885 - 19332938
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  19332885 ggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 19332938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 22312586 - 22312533
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||||||| || ||||| |||| |||||||||| |||||||||||    
T  22312586 ggtgaatgcatatatgttaagtgatggtgattttgttggtgattgcatatatgt 22312533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 24238507 - 24238446
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||| || |||||||  ||||||||| |||||||||||||||||    
T  24238507 atattgttggtgaatacatataagttaattgattgtgatattgtcggtgaatgcatatatgt 24238446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 11543524 - 11543490
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  11543524 atatgatatagttgatgttgattaatgcatatatg 11543490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 22312679 - 22312645
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  22312679 atatgatatagttgatgttgattaatgcatatatg 22312645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 25294979 - 25294945
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  25294979 atatgatatagttgatgttgattaatgcatatatg 25294945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 25756999 - 25756965
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  25756999 atatgatatagttgatgttgattaatgcatatatg 25756965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 45560374 - 45560408
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  45560374 atatgatatagttgatgttgattaatgcatatatg 45560408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 11543431 - 11543379
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| |||||||||| | ||||||||    
T  11543431 ggtgaatgcatatatgttaagtgatggtgattttgttggtgattacatatatg 11543379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 16000993 - 16000941
Alignment:
Q  54 gtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||| |||||||||  ||||||  ||||||||||||||||| |||||||||    
T  16000993 gtgaatacatatatgttgattgattgtgatattgttggtgaatacatatatgt 16000941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 25756908 - 25756856
Alignment:
Q  51 ttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatata 103  Q
    ||||||||| ||||||||| |||||||  ||||||||  ||||||||||||||    
T  25756908 ttggtgaatacatatatgttaattgattgtgatattgccggtgaatgcatata 25756856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 15979280 - 15979323
Alignment:
Q  88 ttggtgaatgcatatatgtaaacatagttgatgttgagtaatgc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15979280 ttggtgaatgcatatatgtaaacatagttgatgttgagtaatgc 15979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 16369644 - 16369706
Alignment:
Q  44 tatatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||| ||||||||| |||||||||| |||||||| |||||||||||||||| ||||||||||    
T  16369644 tatattgttggtgaaggcatatatgttaattgatggtgatattgttggtgaacgcatatatgt 16369706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 16369682 - 16369743
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| ||||||||| |||||||||| |||||||| ||||||||| |||||||||||||||||    
T  16369682 atattgttggtgaacgcatatatgttaattgatggtgatattgtcggtgaatgcatatatgt 16369743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 21676236 - 21676297
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| ||||||| || |||||||||||||||||  ||||||||| |||||||||||||||||    
T  21676236 atattgttggtggatacatatatgtcaattgattgtgatattgtcggtgaatgcatatatgt 21676297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 28719417 - 28719356
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  28719417 atattgttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 28719356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 8564805 - 8564854
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||| |||||||  ||||||||| |||||||||||||||||    
T  8564805 aatgcatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 8564854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 21676137 - 21676186
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||||||||    
T  21676137 aatgcatatatgttaattgatgaggatattgttggtgaatacatatatgt 21676186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 16369613 - 16369669
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||| |||||||| | |||||||| | |||||||||||||| ||||||||||    
T  16369613 gttggtgaacgcatatatattaattgatggttatattgttggtgaaggcatatatgt 16369669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 21676281 - 21676333
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    |||||||||||||||||||| ||||| |||| |||||||||| ||| ||||||    
T  21676281 ggtgaatgcatatatgtcaagtgatggtgattttgttggtgattgcgtatatg 21676333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 28719372 - 28719320
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| |||||||||| ||||||||||    
T  28719372 ggtgaatgcatatatgttaagtgatggtgattttgttggtgattgcatatatg 28719320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 4483738 - 4483704
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  4483738 atatgatatagttgatgttgattaatgcatatatg 4483704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 8564782 - 8564816
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  8564782 atatgatatagttgatgttgattaatgcatatatg 8564816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 16382473 - 16382412
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| ||||||| || ||||||||| ||||||   ||||||||| |||||||||||||||||    
T  16382473 atattgttggtggatacatatatgttaattgagtgtgatattgtcggtgaatgcatatatgt 16382412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 16382510 - 16382449
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||||||  ||||||  |||||||||||||| || |||||||||    
T  16382510 atattgttggtgaatacatatatgtttattgattgtgatattgttggtggatacatatatgt 16382449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 21676162 - 21676223
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||||||  ||||||    |||||||||||||||||||||||||    
T  21676162 atattgttggtgaatacatatatgttgattgattgcaatattgttggtgaatgcatatatgt 21676223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 28719442 - 28719393
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||||||  ||||||  ||||||||||||||||| |||||||||    
T  28719442 aatgcatatatgttgattgattgtgatattgttggtgaatacatatatgt 28719393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 247158 - 247219
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  247158 atatggttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 247219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 4172878 - 4172931
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatata 103  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  4172878 gttggtgaatgcatatatgttaaatgatggtgatattgttggtgaatgcatata 4172931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 4228487 - 4228540
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatata 103  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  4228487 gttggtgaatgcatatatgttaaatgatggtgatattgttggtgaatgcatata 4228540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 21930862 - 21930798
Alignment:
Q  42 catatatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||| |||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  21930862 catatattgttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 21930798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 16135245 - 16135184
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  16135245 atattgttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 16135184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 23220663 - 23220602
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  23220663 atattgttggtgaatacatatatgttaattgattatgatattgtcggtgaatgcatatatgt 23220602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 29161628 - 29161675
Alignment:
Q  59 tgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  29161628 tgcatatatgttaattgatgatgatattgttggtgaatacatatatgt 29161675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 11374103 - 11374164
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| ||||||||||   ||||||| |||||||| ||||||||| |||||||||||||||||    
T  11374103 atattgttggtgaatatgtatatgttaattgatggtgatattgtcggtgaatgcatatatgt 11374164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 29161651 - 29161712
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||||||  ||||||  ||||||||||||||||| |||||||||    
T  29161651 atattgttggtgaatacatatatgttgattgattgtgatattgttggtgaatacatatatgt 29161712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 18104750 - 18104802
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| |||||||||| ||||||||||    
T  18104750 ggtgaatgcatatatgttaagtgatggtgattttgttggtgattgcatatatg 18104802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 11374043 - 11374090
Alignment:
Q  59 tgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||| ||||||||  |||||||||||||||| |||||||||    
T  11374043 tgcatatatgttaattgatgaggatattgttggtgaatacatatatgt 11374090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 25650083 - 25650036
Alignment:
Q  59 tgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||| ||||||||  |||||||||||||||| |||||||||    
T  25650083 tgcatatatgttaattgatgaggatattgttggtgaatacatatatgt 25650036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 16135293 - 16135259
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  16135293 atatgatatagttgatgttgattaatgcatatatg 16135259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 23220711 - 23220677
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  23220711 atatgatatagttgatgttgattaatgcatatatg 23220677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 23220688 - 23220639
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||||||  ||||||  ||||||||||||||||| |||||||||    
T  23220688 aatgcatatatgttgattgattgtgatattgttggtgaatacatatatgt 23220639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 21930814 - 21930762
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || |||||  ||| |||||||||| ||||||||||    
T  21930814 ggtgaatgcatatatgttaactgatggcgattttgttggtgattgcatatatg 21930762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 23220618 - 23220566
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| |||||| ||| ||||||||||    
T  23220618 ggtgaatgcatatatgttaagtgatggtgattttgttgatgattgcatatatg 23220566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 29161767 - 29161823
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||| |||||||||  ||||||   |||||||| |||||||||||||||||    
T  29161767 gttggtgaatacatatatgttgattgattgggatattgtcggtgaatgcatatatgt 29161823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 20455301 - 20455362
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||    
T  20455301 atattgttggtgaatacatatatgttaattgattgtgatattgttggtgaatgcatatatgt 20455362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 14342946 - 14342995
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||||||||    
T  14342946 aatgcatatatgttaattgatgaggatattgttggtgaatacatatatgt 14342995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 20455253 - 20455287
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  20455253 atatgatatagttgatgttgattaatgcatatatg 20455287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 11964904 - 11964851
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||| ||||||||| |||||||  |||||| || |||||||||||||||||    
T  11964904 ggtgaatacatatatgttaattgattgtgatatcgtcggtgaatgcatatatgt 11964851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 20455276 - 20455325
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||||||  ||||||  ||||||||||||||||| |||||||||    
T  20455276 aatgcatatatgttgattgattgtgatattgttggtgaatacatatatgt 20455325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 5371902 - 5371963
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||    
T  5371902 atattgttggtgaatacatatatgttaattgattgtgatattgttggtgaatgcatatatgt 5371963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 14570218 - 14570157
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  14570218 atatggttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 14570157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 54364776 - 54364837
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  54364776 atattgttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 54364837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 19082355 - 19082410
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||| |||||| | |||||||| |||||||||||||||||| |||||||    
T  19082355 gttggtgaatgtatatatattaattgatggtgatattgttggtgaatgtatatatg 19082410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 17376732 - 17376787
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    |||||| |||||||||||||  ||||||  ||||||||||||||||| ||||||||    
T  17376732 gttggttaatgcatatatgttgattgattgtgatattgttggtgaatacatatatg 17376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 5371854 - 5371888
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  5371854 atatgatatagttgatgttgattaatgcatatatg 5371888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 5371877 - 5371926
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||||||  ||||||  ||||||||||||||||| |||||||||    
T  5371877 aatgcatatatgttgattgattgtgatattgttggtgaatacatatatgt 5371926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 12134999 - 12135051
Alignment:
Q  54 gtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||| ||||||||| |||||||  ||||| ||| |||||||||||||||||    
T  12134999 gtgaatacatatatgttaattgattgtgataatgtcggtgaatgcatatatgt 12135051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 17376806 - 17376858
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| ||||||| || ||||||||||    
T  17376806 ggtgaatgcatatatgttaagtgatggtgattttgttggagattgcatatatg 17376858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 54364744 - 54364800
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||| |||||||||  ||| ||  ||||||||||||||||| |||||||||    
T  54364744 gttggtgaatacatatatgttgatttattgtgatattgttggtgaatacatatatgt 54364800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 24562075 - 24562136
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||    
T  24562075 atattgttggtgaatacatatatgttaattgattttgatattgtcggtgaatgcatatatgt 24562136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 45618709 - 45618754
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatat 102  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||    
T  45618709 aatgcatatatgttaattgatggtgatattgttggtgaatgcatat 45618754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 20272353 - 20272298
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    |||||||||| ||||||||| |||||||  ||||||||| ||||||||||||||||    
T  20272353 gttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatg 20272298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 29113200 - 29113145
Alignment:
Q  51 ttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  29113200 ttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 29113145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 24562120 - 24562172
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| |||||||||| ||||||||||    
T  24562120 ggtgaatgcatatatgttaagtgatggtgattttgttggtgattgcatatatg 24562172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 18534779 - 18534728
Alignment:
Q  55 tgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  18534779 tgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 18534728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 18534837 - 18534803
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  18534837 atatgatatagttgatgttgattaatgcatatatg 18534803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 24562050 - 24562099
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||||||  ||||||  ||||||||||||||||| |||||||||    
T  24562050 aatgcatatatgttgattgattgtgatattgttggtgaatacatatatgt 24562099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 24840766 - 24840705
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||| ||||||||||||||||  ||||||   |||||||||||||||  |||||||||    
T  24840766 atatggtttgtgaatgcatatatgttgattgattgagatattgttggtgaaaacatatatgt 24840705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 15030 - 15079
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  15030 aatgcatatatgttaattgatggtgatattgttggtgaatacatatatgt 15079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 15055 - 15116
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||||||  ||||||  ||||||||||||||||| |||||||||    
T  15055 atattgttggtgaatacatatatgttgattgattgtgatattgttggtgaatacatatatgt 15116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 5402 - 5463
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| ||||||||||  ||||||||||||||||  ||||||||| |||||||||||||||||    
T  5402 atattgttggtgaataaatatatgtcaattgattgtgatattgtcggtgaatgcatatatgt 5463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 5328 - 5389
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||||||  ||||||  ||||||||||| |||||||||||||||    
T  5328 atattgttggtgaatacatatatgtggattgattgtgatattgttgttgaatgcatatatgt 5389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 5447 - 5499
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| |||||||||| ||||||||||    
T  5447 ggtgaatgcatatatgttaagtgatggtgattttgttggtgattgcatatatg 5499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 5303 - 5352
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||| ||||||||  |||||||||||||||| |||||||||    
T  5303 aatgtatatatgttaattgatgaggatattgttggtgaatacatatatgt 5352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 11401562 - 11401513
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  11401562 aatgcatatatgttaattgatggtgatattgttggtgaatacatatatgt 11401513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 11401537 - 11401476
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||||||  ||||||  ||||||||| |||||||||||||||||    
T  11401537 atattgttggtgaatacatatatgttgattgattgtgatattgtcggtgaatgcatatatgt 11401476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 11401492 - 11401440
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| |||||||||| ||||||||||    
T  11401492 ggtgaatgcatatatgttaagtgatggtgattttgttggtgattgcatatatg 11401440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 14968558 - 14968508
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcat 100  Q
    |||||||||||||||||||| || | ||||||||  |||||||||||||||    
T  14968558 gttggtgaatgcatatatgttaaataatgttgatgatgttggtgaatgcat 14968508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 5229293 - 5229342
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||||||  ||||||  ||||||||| |||||||||||||||||    
T  5229293 aatgcatatatgttgattgattgtgatattgtcggtgaatgcatatatgt 5229342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 38377016 - 38377077
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| ||| ||||| |||||||  |||||||||  ||||||||||||||||    
T  38377016 atattgttggtgaatacatgtatgttaattgattgtgatattgtcagtgaatgcatatatgt 38377077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 17759656 - 17759712
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||| |||||||||  |||| |  ||||||||||||||||| |||||||||    
T  17759656 gttggtgaatacatatatgttgattggttgtgatattgttggtgaatacatatatgt 17759712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 19060976 - 19061032
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||| |||||||||  |||| |  ||||||||||||||||| |||||||||    
T  19060976 gttggtgaatacatatatgttgattggttgtgatattgttggtgaatacatatatgt 19061032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 20821912 - 20821856
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||    
T  20821912 gttggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgt 20821856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 77247 - 77308
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| || |||||| |||||||  ||||||||| |||||||||||||||||    
T  77247 atattgttggtgaatacacatatgttaattgattgtgatattgtgggtgaatgcatatatgt 77308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 20821872 - 20821820
Alignment:
Q  53 ggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||| || ||||| |||| |||||||||| ||||||||||    
T  20821872 ggtgaatgcatatatgttaagtgatggtgattttgttggtgattgcatatatg 20821820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 20821954 - 20821893
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||| | |||||||||  ||||||  ||||| ||||||||||| |||||||||    
T  20821954 atatggttggtgagtacatatatgttgattgattatgataatgttggtgaatacatatatgt 20821893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 14171 - 14232
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    ||||||||||||||| |||||||||  || |||  ||||||||||||||||| |||||||||    
T  14171 atatggttggtgaatacatatatgttgatcgattgtgatattgttggtgaatacatatatgt 14232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 5848 - 5907
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatat 104  Q
    |||| |||||||||| ||||||||  |||||||  ||||||||| |||||||||||||||    
T  5848 atattgttggtgaatacatatatgctaattgattgtgatattgtcggtgaatgcatatat 5907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 1443 - 1491
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    |||||||||||||  ||||||  ||||||||||||||||| ||||||||    
T  1443 aatgcatatatgttgattgattgtgatattgttggtgaatacatatatg 1491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 5823 - 5871
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatg 105  Q
    |||||||||||||  ||||||  ||||||||||||||||| ||||||||    
T  5823 aatgcatatatgttgattgattgtgatattgttggtgaatacatatatg 5871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 105
Target Start/End: Complemental strand, 54994 - 54963
Alignment:
Q  74 tgatgttgatattgttggtgaatgcatatatg 105  Q
    ||||||||||||||||||||||||||||||||    
T  54994 tgatgttgatattgttggtgaatgcatatatg 54963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 12249 - 12283
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  12249 atatgatatagttgatgttgattaatgcatatatg 12283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 9821 - 9787
Alignment:
Q  15 atatgatatagttgatgttgattagtgcatatatg 49  Q
    |||||||||||||||||||||||| ||||||||||    
T  9821 atatgatatagttgatgttgattaatgcatatatg 9787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 1427 - 1488
Alignment:
Q  45 atatggttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||| |||||||||| |||||||||  |||| |  ||||||||||||||||| |||||||||    
T  1427 atattgttggtgaatacatatatgttgattggttgtgatattgttggtgaatacatatatgt 1488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 11568 - 11519
Alignment:
Q  57 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||||||||  | ||||| ||||||||| |||||||||||||||||    
T  11568 aatgcatatatgttgactgatggtgatattgtcggtgaatgcatatatgt 11519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 255650 - 255703
Alignment:
Q  51 ttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatat 104  Q
    ||||||||| |||||||||  ||||||  ||||||||||||||||| |||||||    
T  255650 ttggtgaatacatatatgttgattgattgtgatattgttggtgaatacatatat 255703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 98393 - 98448
Alignment:
Q  50 gttggtgaatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 106  Q
    |||||||| | |||||||||||| | ||| ||| |||||||||||||||||||||||    
T  98393 gttggtgagttcatatatgtcaagtaatggtga-attgttggtgaatgcatatatgt 98448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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