View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_7 (Length: 518)
Name: NF20226_low_7
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 502
Target Start/End: Original strand, 47629822 - 47630314
Alignment:
| Q |
11 |
gaagaagttcattggggttttgtgattggaaacgagtaaaaggaaactcatttaggttaggttgatttggtggcgttggtttgcgaccaatgagtttgct |
110 |
Q |
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| T |
47629822 |
gaagaagttcattggggttttgtgattggaaacgagtaaaaggaaactcacttaggttaggttgatttggtgacgttggtttgcgaccaattaatttgct |
47629921 |
T |
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| Q |
111 |
ctttcttaaaatcttaggttcgattataaatgaaagaactcataaaccttttaccttaaaattttaattttgttcaattgatttatcgcttgtttagctt |
210 |
Q |
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| T |
47629922 |
ctttcttaaggtctcacgttcgattataaatgaaagaactcataaaccttttaccttaaatttttaattttgttcaattgatttatcgcttgtttagctt |
47630021 |
T |
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| Q |
211 |
aattgaataacaattgataaaatgcttaatataggtttgatcaaattcaaatttaggtcacttgtgttataggtgtttgttctctcatgactaatcgatt |
310 |
Q |
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| T |
47630022 |
aatcgaataacaattgataaaatgcttaatataggtttgatcaaattcaaatttaggtcacttgtgttataggtgtttgttctctcatgactaatcgatt |
47630121 |
T |
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| Q |
311 |
gaacttttttatgcttaataatcaataagaatcccaatagaaattattcgacgcttgttcgattactttctaccaaacaattataaaaattatagaacca |
410 |
Q |
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| T |
47630122 |
gaacttttttatgcttaataatcaataagagtccaaatagaaattattcgacgcttgttcgattactttctaccaaacaattataaaaattatagaacca |
47630221 |
T |
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| Q |
411 |
atgctaatagatatcc-aaaagaagtgtgtgaagcttaatgggttggttactttcaccaaattcataacttcacagtcaaattatgttttcta |
502 |
Q |
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| T |
47630222 |
atgctaatatatatccaaaaagaagtgtgtgaagcttaatgggttggttactttcaccaaattcataacttcacagtcaaattatgttttcta |
47630314 |
T |
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