View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_low_9 (Length: 492)
Name: NF20226_low_9
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 47458938 - 47459408
Alignment:
| Q |
1 |
actacttactatatatagctaaaatatcatgtttcatacaaaagcaatttagtcagaagttggtatactcttccatatatccaactttttagatacaaat |
100 |
Q |
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| T |
47458938 |
actacttactatatatagctaaaatatcatgtttcatacaaaagcaacttagtcagaagttggtatactcttccatatatccaactttttagatacaaat |
47459037 |
T |
|
| Q |
101 |
taacccaaaaaatacccattaattaa-----tatttggg-tttccaattaaaggtgagcaaagcaaacaacgttggcaagttgaacttgaagccttgaaa |
194 |
Q |
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| T |
47459038 |
taacccaaaaaatacccattaattaaattaatatttggggtttccaattaaaggtgagcaaagcaaacaacgttggcaagttgaacttgaagccttgaaa |
47459137 |
T |
|
| Q |
195 |
gatggtttgtgttgacttaattatctatcccctgctcttaagcaatttgaggcgttgcgcacactcaatgaaacttctgcaaccaaacacacaaatttta |
294 |
Q |
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| T |
47459138 |
gatggtttgtgttgacttaattatctatcccctgctcttaagcaatttgaggcgttgcgcacactcaatgaaacttctgcaaccaaacacacaaatttta |
47459237 |
T |
|
| Q |
295 |
tttagaacataaattactagaacatacattcccttaattgttagagacagtgtgcttaaaattccctaattataaaccctcatttcatatttcacatata |
394 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47459238 |
tttagaacataaatcactagaacatacattcccttaattgttagagacaatgtgcttaaaattccctaattataaaccctcatttcatatttcacatata |
47459337 |
T |
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| Q |
395 |
ttnnnnnnnnttggtaatgtaattaaagtatttattttaagtagtactaatataatataatcttgcctata |
465 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
47459338 |
ttaaaaaaaattggtaatgtaattaaagtatttattttgagtagtactaatataatataatcttgcgtata |
47459408 |
T |
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