View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_high_6 (Length: 297)
Name: NF20227_high_6
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 15824653 - 15824374
Alignment:
| Q |
1 |
gtttcaatactagtcactcctttcaccttggaatggatcatctttatcttccttacacaaattctcattcctgcataaaatatctaacacttcaatccat |
100 |
Q |
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| T |
15824653 |
gtttcaatacgagtcactcctttcaccttggaatggatcatctttatcttccttacacaaattctcattcctgcataaaatatctaacacttcaatccat |
15824554 |
T |
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| Q |
101 |
ttaactttcattctcatccatattctcaactctgaactctaaactctaaaacactttcatgcttcaatcatcaatggaaggtaccctcttccctaataga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15824553 |
ttaactttcattctcatccatattctcaactctgaactctaaactctaaaacactttcatgcttcaatcatcaatggaaggtaccctcttccctaataga |
15824454 |
T |
|
| Q |
201 |
ccagttcttccactccccactaaaaaaccaacccaagcattgaaattcaaaccaacattttcacattctccaccaccaac |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15824453 |
ccagttcttccactccccactaaaaaaccaacccaagcattgaaattcaaaccaacattttcacattctccaccaccaac |
15824374 |
T |
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