View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_high_7 (Length: 285)
Name: NF20227_high_7
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_high_7 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 7501905 - 7501644
Alignment:
| Q |
15 |
gtttcatcttttgaaatggccagtaattgatatgacttgtagaacactacagcaaacttttgtaggaaactcccattaacagaaatatgaatgaaaaatg |
114 |
Q |
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| T |
7501905 |
gtttcatcttttgaaatgtccagtaattgatatgacttgtagaacactacaacaaacttttgcaggaaactcccattaacagaaatatgaatgaaaaatg |
7501806 |
T |
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| Q |
115 |
attcaatttctggtattttgtaaatgatacaactcggttgagttttatgactaatgagtgttaattgttaaatatccgttatattggcactatactgcca |
214 |
Q |
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| T |
7501805 |
attcaatttctggtattttgtaaatgatacaactcggttgagttttatgactaatgagtgttaattgttaaatatccgttatattggcactatactgcca |
7501706 |
T |
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| Q |
215 |
cactgtatccgaatttagggtagacggtacgaaatccaacatggtttagcaactttgatatt |
276 |
Q |
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| T |
7501705 |
taccgtatcggaatttagggtagacgatacgaaatccaacatggtttagcaactttgatatt |
7501644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 7498830 - 7498736
Alignment:
| Q |
68 |
aaacttttgtaggaaactcccattaacagaaatatgaatgaaaaatgattcaatttctggtattttgtaaatgatacaactcggttgagttttatg |
163 |
Q |
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| T |
7498830 |
aaacttttgtaggaaactcc-agtaattgaaatatcgatgaagaatgatacaatttctggtattttctaaatgatacaacttggttgagttttatg |
7498736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 13408 - 13450
Alignment:
| Q |
128 |
tattttgtaaatgatacaactcggttgagttttatgactaatg |
170 |
Q |
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| T |
13408 |
tattttgtaaatgatacaactcggatgagttttatgactaatg |
13450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 33280845 - 33280803
Alignment:
| Q |
128 |
tattttgtaaatgatacaactcggttgagttttatgactaatg |
170 |
Q |
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| T |
33280845 |
tattttgtaaatgatacaactcggatgagttttatgactaatg |
33280803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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