View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_low_1 (Length: 813)
Name: NF20227_low_1
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 39880173 - 39879790
Alignment:
| Q |
9 |
ggacatcatcgtcaacacatatcacatgtttcacagagtcgagttgtccagcaatatttacaagtgatttcaattctttgcggccacaaatcacagtcgt |
108 |
Q |
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| T |
39880173 |
ggacatcatcgtcaacacatatcacacgtttcacagagtcaagttgtccagcaatatttacaagtgatttcaattctttgcggccacaaatcacagtcgt |
39880074 |
T |
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| Q |
109 |
aacctctgtctggtacagatttcacaaatgaggttatcaaaataacaacaacaacaagagcacaggaactaaattaccaatacgatggtgatgaagaaaa |
208 |
Q |
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| T |
39880073 |
aacctctgtctggtacagatttcacaaatgaggttatcaaaataacaacaacaacaagagcacaggaactaaattaccaatacgatggtgatgaagaaaa |
39879974 |
T |
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| Q |
209 |
caatacaattgttgtgctttaaaccataaccgcaaatctgaaggtaaatttcaatactgctagaaattcacaggtaaactaaaaaccatgtgaaatagaa |
308 |
Q |
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| T |
39879973 |
caatacaattgttgtgcttcaaaccataaccgcaaatctgaaggtaaatttcaatactgctagaaattcacaggtaaactaaaaaccatgtgaaatagaa |
39879874 |
T |
|
| Q |
309 |
ttgactttcttgcaagcaaataaactttaaaactttaatttaaacaccataaattacatgttgagcagttaagtgatgccctac |
392 |
Q |
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| T |
39879873 |
ttgactttcttgcaagcaaataaactttaaaactttaatttaaacaccataaattacatgttgagcagttaagtgatgccctac |
39879790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 448 - 813
Target Start/End: Complemental strand, 39879734 - 39879369
Alignment:
| Q |
448 |
cgagaacttgttaaagagaaaatggaaaagaaataaagccccggtgtacctatgaactatatcacttgttaattttttcccaacaaaacttgcaaactca |
547 |
Q |
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| T |
39879734 |
cgagaacttgttaaagagaaaatggaaaagaaataaagccccggtgtacctatgaactatatcacttgttaattttttcccaacaaaacttgcaaactca |
39879635 |
T |
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| Q |
548 |
gtattaatactgccctcaagagatttgtgccgatcattcatattatgccatctaatgaggtgtccataaaattattttcaaaatgacatgaaagggagat |
647 |
Q |
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| T |
39879634 |
gtattaatactgccctcaagagatttgtgccgatcattcatattatgccatctaatgaggtgtccataaaattattttcaaaatgacatgaaagggagat |
39879535 |
T |
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| Q |
648 |
gtacattataatctaaaatttcatcttctccctcttcttttcacgtagtacgggtgcgatacggatacatgaaattatttaaattcaagatatgatacgg |
747 |
Q |
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| T |
39879534 |
gtacattataatctaaaatttcatcttctccctcttcttttcacgtagtacgggtgcgatacggatacatgaaattatttaaattcaagatatgatacgg |
39879435 |
T |
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| Q |
748 |
cctagatacgttagcaaaacttttataacaaagattatatagatgtaaaatacttgtaaagatcta |
813 |
Q |
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| T |
39879434 |
cctagatacgttagcaaaacatttataacaaagattatatagatgtaaaatacttgtaaagatcta |
39879369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 10517105 - 10517199
Alignment:
| Q |
26 |
catatcacatgtttcacagagtcgagttgtccagcaatatttacaagtgatttcaattctttgcggccacaaatcacagtcgtaacctctgtctg |
120 |
Q |
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||||||||| ||||||| ||||| |||||||| |||||||||||||| |||||||||||| | |||||||| || ||||| ||||||||||| |
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| T |
10517105 |
catatcacacgtttcactgagtcaagttgtccgctaatatttacaagtgttttcaattctttctgtccacaaattacggtcgtgacctctgtctg |
10517199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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