View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20227_low_12 (Length: 237)
Name: NF20227_low_12
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 18444201 - 18444406
Alignment:
| Q |
14 |
attatactatgattcacaaaggtatcccgcctcaacgagatgttcaacgcgtttcattgtttaggagacaatgtaaaatacagccattcaatgttacaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18444201 |
attatactatgattcacaaaggtatcccgcctcaacgagatgttcaacgtgtttcatcgtttaggagacaatgtaaaatacagccattcaatgttacaca |
18444300 |
T |
|
| Q |
114 |
aacaacgtattccctaaatatattggacagtctaaaaatactattacaacaacagaaaaatgtcgacgttctagtaaagccgtcctcggcatttcaaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
18444301 |
aacaacgtattccctaaatatattggacagtctaaaaatactattacaacaacagaaaaatgtcgaggttctagtaaagccatcctcggtatttcaaaat |
18444400 |
T |
|
| Q |
214 |
acaaag |
219 |
Q |
| |
|
|||||| |
|
|
| T |
18444401 |
acaaag |
18444406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 33485737 - 33485836
Alignment:
| Q |
109 |
acacaaacaacgtattccctaaatatattggacagtctaaaaatactattacaacaacagaaaaatgtcgacgttctagtaaagccgtcctcggcatttc |
208 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||| | ||||| ||||||| |
|
|
| T |
33485737 |
acacaaacaacttattcccgcaatatactggacagtctaaaa---cacttacaacaacagaaaaatgtcgaggttctagtaaaggcttcctcagcatttc |
33485833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 33485619 - 33485699
Alignment:
| Q |
33 |
aggtatcccgcctcaacgagatgttcaacgcgtttcattgtttaggagacaatgtaaaatacagccattcaatgttacaca |
113 |
Q |
| |
|
|||||||| || |||| |||||||||||| || |||| ||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
33485619 |
aggtatcctgcatcaaatagatgttcaacgtgtctcatcttttaggagacaatctaaaatacaaccattcaatgttacaca |
33485699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 55443557 - 55443658
Alignment:
| Q |
100 |
ttcaatgttacacaaacaacgtattccctaaatatattggacagtctaaaaatactattacaacaacagaaa-aatgtcgacgttctagtaaagccgtcc |
198 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| ||||| |||||||| |||||||||||| |||| ||| |||| |||||||||||| ||||| |
|
|
| T |
55443557 |
ttcaatgttacaaaaacaacctattccctaaatg----ggacaatctaaaaacactattacaaca---gaaagaatttcgaggttctagtaaaggcgtcc |
55443649 |
T |
|
| Q |
199 |
tcggcattt |
207 |
Q |
| |
|
||||||||| |
|
|
| T |
55443650 |
tcggcattt |
55443658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 55443434 - 55443533
Alignment:
| Q |
14 |
attatactatgattcacaaaggtatcccgcctcaacgagatgttcaacgcgtttcattgtttaggagacaatgtaaaatacagccattcaatgttacaca |
113 |
Q |
| |
|
|||||||| |||||| |||||| ||| | |||| ||||||||||| | || |||| ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
55443434 |
attatactttgattcgcaaaggaatcatgtatcaatgagatgttcaatgtgtctcatcttttaggagacaatctaaaatacaatcattcaatgttacaca |
55443533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University