View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_low_13 (Length: 237)
Name: NF20227_low_13
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11878676 - 11878454
Alignment:
| Q |
1 |
aattgattttaatgtaaaacttagtatttgtaggcttgtagcttgactcacttttcagtgaacgtttgcaaacacaaaacataacaagtaacaacagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11878676 |
aattgattttaatgtaaaacttagtatttgtaggcttgtagcttgactcacttttcagtgaacgtttgcaaacacaaatcataacaagtaacaacagaat |
11878577 |
T |
|
| Q |
101 |
caaccgttgatattcgagtgcannnnnnnnncattaaaggttgaaattgtttactttactgataattttagatgagctatatccattgagtttcattgat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11878576 |
caaccgttgatattcgagtgcatttttttttcattaaaggttgaaattgtttactttactgataattttagatgagctatatccattgagtttcattgat |
11878477 |
T |
|
| Q |
201 |
ataccttgtcaaataaaatattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
11878476 |
ataccttgtcaaataaaatattt |
11878454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11893683 - 11893461
Alignment:
| Q |
1 |
aattgattttaatgtaaaacttagtatttgtaggcttgtagcttgactcacttttcagtgaacgtttgcaaacacaaaacataacaagtaacaacagaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11893683 |
aattgattttaatgtaaaacttagtatttgtaggcttgtagcttgactcacttttcagtgaacgtttgcaaacacaaatcataacaagtaacaacagaat |
11893584 |
T |
|
| Q |
101 |
caaccgttgatattcgagtgcannnnnnnnncattaaaggttgaaattgtttactttactgataattttagatgagctatatccattgagtttcattgat |
200 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11893583 |
caaccgttgatattcgagtgcatttttttttcattaaaggttgaaattgtttactttactgataattttagatgagctatatccattgagtttcattgat |
11893484 |
T |
|
| Q |
201 |
ataccttgtcaaataaaatattt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
11893483 |
ataccttgtcaaataaaatattt |
11893461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11896092 - 11895870
Alignment:
| Q |
1 |
aattgattttaatgtaaaacttagtatttgtaggcttgtagcttgactcacttttcagtgaacgtttgcaaacacaaaacataacaagtaacaacagaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11896092 |
aattgattttaatgtaaaacttagtatttgtaggcttgtagcttgactcacttttcagtgaacgtttgcaaacacaaatcataacaagtaacaacagaat |
11895993 |
T |
|
| Q |
101 |
caaccgttgatattcgagtgcannnnnnnnncattaaaggttgaaattgtttactttactgataattttagatgagctatatccattgagtttcattgat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11895992 |
caaccgttgatattcgagtgcatttttttttcattaaaggttgaaattgtttactttactgataattttagatgagctatatccattgagtttcattgat |
11895893 |
T |
|
| Q |
201 |
ataccttgtcaaataaaatattt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
11895892 |
ataccttgtcaaataaaatattt |
11895870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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