View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_low_14 (Length: 232)
Name: NF20227_low_14
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 5625870 - 5625668
Alignment:
| Q |
17 |
ataatgtcgctaacaaatacttaagtcagtttagaatcggtgttgggattgacattgaagtgttttcatctaagcattagcgtcaagacaaacgatcata |
116 |
Q |
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| T |
5625870 |
ataatgtcgctaacaaatacttaagtcagtttagaatcggtgttgggattgacattgaagtgttttcatctaagcattagcgtcaagacaaacgataata |
5625771 |
T |
|
| Q |
117 |
cgtgttggctatgcccacac----taaccaatggtcgacgcttactatcgtcaatttgatcaccataatgaaataacctacatactattttcaagtcaat |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5625770 |
agtgttggctatgcccacactaattaaccaatggtcgacgcttactatcgtcaatttgatcaccataatgaaataacctacatactattttcaagtcaat |
5625671 |
T |
|
| Q |
213 |
act |
215 |
Q |
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||| |
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| T |
5625670 |
act |
5625668 |
T |
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