View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20227_low_16 (Length: 215)

Name: NF20227_low_16
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20227_low_16
NF20227_low_16
[»] chr5 (13 HSPs)
chr5 (16-197)||(10601032-10601221)
chr5 (16-197)||(10603929-10604118)
chr5 (16-153)||(10217592-10217726)
chr5 (16-150)||(10747858-10747992)
chr5 (77-158)||(10580229-10580310)
chr5 (16-158)||(10741542-10741684)
chr5 (16-99)||(10717783-10717866)
chr5 (16-158)||(10610934-10611076)
chr5 (16-158)||(10763976-10764118)
chr5 (48-158)||(10558144-10558254)
chr5 (56-158)||(9837211-9837313)
chr5 (17-133)||(10660929-10661045)
chr5 (16-80)||(11049500-11049564)
[»] chr6 (2 HSPs)
chr6 (16-158)||(12931503-12931645)
chr6 (16-158)||(12947868-12948010)
[»] chr2 (1 HSPs)
chr2 (16-131)||(17924246-17924361)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 10601221 - 10601032
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  10601221 agaggatggtattgttccgttgaaagaattctcttgcaaatgaaggtattctaagcttacatattcaccaatggttccagtaatctccccacacaaatga 10601122  T
Q  116 ttctcagagacatctagccaatcaatattttttagcataccca--------ggtaagctacctctcaatatgtttcgtcacaagtcaagt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||| |||||||||||    
T  10601121 ttctcagagacatctagccaatcaatattttttagcatacccacttcttttgttaagctacctctcaatatgtttcgtgacaagtcaagt 10601032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 10604118 - 10603929
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    |||||||||||||||||| ||||| || ||| |||||||| ||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  10604118 agaggatggtattgttccgttgaatgagttcccttgcaaacgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatga 10604019  T
Q  116 ttctcagagacatctagccaatcaatattttttagcataccca--------ggtaagctacctctcaatatgtttcgtcacaagtcaagt 197  Q
    || ||||||||||||| ||||||||||||||||||||||||||        ||||||||||| |||||| |||||||| |||||||||||    
T  10604018 ttttcagagacatctaaccaatcaatattttttagcatacccacttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagt 10603929  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 10217592 - 10217726
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||| || |||||||| |||||||||||| |   |||||| || ||| ||| || |    
T  10217592 agaggatggtattgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcaccaatgat---aggaatatcaccaaacagatta 10217688  T
Q  116 ttctcagagacatctagccaatcaatattttttagcat 153  Q
    || ||||| |||||||||  | ||||||||||||||||    
T  10217689 ttttcagaaacatctagcttaccaatattttttagcat 10217726  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 10747858 - 10747992
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    |||||||||||||||||||||||| || ||| ||||||  |||||||| ||||||  |   || |||||||| |||  |||||| || ||| | | ||||    
T  10747858 agaggatggtattgttccattgaaggagttcccttgcaggtgaaggtattctaaggctgtgcaatcaccaattgttgtaggaatatcaccagatagatga 10747957  T
Q  116 ttctcagagacatctagccaatcaatattttttag 150  Q
    |||||||||||||||||||||||||||||||||||    
T  10747958 ttctcagagacatctagccaatcaatattttttag 10747992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 10580310 - 10580229
Alignment:
Q  77 cattcaccaatggttccaggaatctccccacacaaatgattctcagagacatctagccaatcaatattttttagcataccca 158  Q
    |||||||||||||||||| |||| |||||| | ||| |||||||||||||||||| ||  |||||| |||||||||||||||    
T  10580310 cattcaccaatggttccaagaatgtccccaaataaacgattctcagagacatctaccccctcaatactttttagcataccca 10580229  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 10741542 - 10741684
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    ||||||||||||||||||  |||| || ||| ||||||| |||||||| |||||| ||   ||||||||||| |||| |||||| || ||| | | | ||    
T  10741542 agaggatggtattgttccgctgaaggagttcccttgcaattgaaggtattctaaggttgtgcattcaccaattgttctaggaatatcaccagatagacga 10741641  T
Q  116 ttctcagagacatctagccaatcaatattttttagcataccca 158  Q
    |||||||| | |||||||   ||||||||||||| ||||||||    
T  10741642 ttctcagatagatctagcatgtcaatattttttaacataccca 10741684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 10717783 - 10717866
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaat 99  Q
    |||||||||||||||||||||||  || ||| ||| ||||||||| || || ||||| |  |||||||||||||||||||||||    
T  10717783 agaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaatggttccaggaat 10717866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 10611076 - 10610934
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    |||||| ||||||||||||||||| || ||  |||||||| ||||||| ||||| |||| |||||||||||  |||| |||||  |    | | |  |||    
T  10611076 agaggaaggtattgttccattgaaggagttaccttgcaaaagaaggtattctaaacttatacattcaccaactgttctaggaagataagaagatagttga 10610977  T
Q  116 ttctcagagacatctagccaatcaatattttttagcataccca 158  Q
    |||||||| |||||||||  || ||||||||||||||||||||    
T  10610976 ttctcagatacatctagcatattaatattttttagcataccca 10610934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 10763976 - 10764118
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    ||||||||||||||||||  |||| || ||| ||||||| |||||||| |||||| ||   ||||||||||| |||  |||||| || ||| | | ||||    
T  10763976 agaggatggtattgttccgctgaaggagttcccttgcaattgaaggtattctaaggttgtgcattcaccaattgttttaggaatatcaccagatagatga 10764075  T
Q  116 ttctcagagacatctagccaatcaatattttttagcataccca 158  Q
    |||||||| | ||| |||   ||||||||||||| ||||||||    
T  10764076 ttctcagatagatccagcatgtcaatattttttaacataccca 10764118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 10558254 - 10558144
Alignment:
Q  48 cttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatgattctcagagacatctagccaatcaatattttt 147  Q
    ||||||||  |||||| |||||||||   |||| | ||||||||  |||||| || ||| |||||| ||||||||||| |||||||  || |||||||||    
T  10558254 cttgcaaaaaaaggtattctaagcttttgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagcttattaatattttt 10558155  T
Q  148 tagcataccca 158  Q
    |||| ||||||    
T  10558154 tagcctaccca 10558144  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 9837211 - 9837313
Alignment:
Q  56 tgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatgattctcagagacatctagccaatcaatattttttagcatac 155  Q
    |||||||| ||||| ||||  ||||||||||| |||   ||||| || ||  ||| |||||| |||||||||||||||  || |||||||||||||| ||    
T  9837211 tgaaggtattctaaacttatgcattcaccaattgttattggaatgtcacccgacagatgattttcagagacatctagcttatgaatattttttagcaaac 9837310  T
Q  156 cca 158  Q
    |||    
T  9837311 cca 9837313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 10660929 - 10661045
Alignment:
Q  17 gaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatgat 116  Q
    ||||||||||| ||||| |||||||| ||| ||||||||| ||||   ||||||  ||  ||||||||||||||| | ||||| || ||| | | || ||    
T  10660929 gaggatggtatggttccgttgaaagagttcccttgcaaataaaggctatctaagactatgcattcaccaatggttactggaatttcaccagatagataat 10661028  T
Q  117 tctcagagacatctagc 133  Q
    | || ||||||||||||    
T  10661029 tatctgagacatctagc 10661045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 11049500 - 11049564
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacatt 80  Q
    |||||| ||||||||||||||||| || ||| |||||||  ||||||| || |||||||| ||||    
T  11049500 agaggacggtattgttccattgaaggagttcccttgcaagagaaggtattcgaagcttacgcatt 11049564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 12931645 - 12931503
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    |||||| ||||||||||| ||||| || |||  |||||||||||  || |||||||||  ||||||||||||   || |||||| || ||| | | ||||    
T  12931645 agaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttgtacattcaccaatttctctaggaatatcaccagatagatga 12931546  T
Q  116 ttctcagagacatctagccaatcaatattttttagcataccca 158  Q
    ||||||||||||||||     ||||||||||||| ||||||||    
T  12931545 ttctcagagacatctaatgcttcaatattttttaacataccca 12931503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 12948010 - 12947868
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    |||||| ||||||||||| ||||| || |||  |||||||||||  || |||||||||  ||||||||||||   || |||||| || ||| | | ||||    
T  12948010 agaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttgtacattcaccaatttctctaggaatatcaccagatagatga 12947911  T
Q  116 ttctcagagacatctagccaatcaatattttttagcataccca 158  Q
    ||||||||||||||||     ||||||||||||| ||||||||    
T  12947910 ttctcagagacatctaatgcttcaatattttttaacataccca 12947868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 17924246 - 17924361
Alignment:
Q  16 agaggatggtattgttccattgaaagaattctcttgcaaatgaaggtactctaagcttacacattcaccaatggttccaggaatctccccacacaaatga 115  Q
    |||||| ||||||||||| ||||| || |||  |||||||||||  || |||||||||| ||||||||||||   ||  ||||| || ||| | | ||||    
T  17924246 agaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttatacattcaccaatttctctcggaatatcaccagatagatga 17924345  T
Q  116 ttctcagagacatcta 131  Q
    ||||||||||||||||    
T  17924346 ttctcagagacatcta 17924361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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