View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_low_4 (Length: 407)
Name: NF20227_low_4
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Complemental strand, 39878924 - 39878545
Alignment:
| Q |
10 |
gcagagagcaaacctcgttcaatgagtgacacaaagcttcttctcccaaagaagcataaatggtaacaacagtcacatttctcctgaagcaagcctgaac |
109 |
Q |
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| T |
39878924 |
gcagagagcaaacctcgttcaatgagtgacacaaagcttcttctcccaaagaagcataaatggtaacaacagtcacatttctcctgaagcaagcctgaac |
39878825 |
T |
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| Q |
110 |
gaacnnnnnnngcgtaaaatcattctcttccatctaagttcaaatttcaaaactgaacaaaaatcagaataattttttcattgaagcataaaaacaaaca |
209 |
Q |
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| T |
39878824 |
gaacaaaaaaagcgtaaaatcattctcttccatctaagttcaaatttcaaaactgaacaaaaatcagaatcattttttcattgaagcataaaaacaaaca |
39878725 |
T |
|
| Q |
210 |
cctgcaatgcaataaaccattcttctctagtgtcagcataaattgcaacacgttcttctctaacatgaccaatcttcaccaaaccagaagcaaaactaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39878724 |
cctgcaatgcaataaaccattcttctctagtgtcagcataaattgcaacacgttcttctctaacatgaccaatcttcaccaaaccagaagcaaaactaca |
39878625 |
T |
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| Q |
310 |
aacagattcaaaaacctttccatacgtaacccattgatactctccaagatgaagcttctcgaactttcttccatcagaag |
389 |
Q |
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| T |
39878624 |
aacagattcaaaaaccttcccatacgtaacccattgatactctccaagatgaagcttctcgaactttcttccatcagaag |
39878545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 10517320 - 10517408
Alignment:
| Q |
20 |
aacctcgttcaatgagtgacacaaagcttcttctcccaaagaagcataaatggtaacaacagtcacatttctcctgaagcaagcctgaa |
108 |
Q |
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|||||| |||||||||||||| |||||||| |||||||| || ||||| || || ||||| ||||| |||| |||||| ||| |||||| |
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| T |
10517320 |
aacctcattcaatgagtgacataaagcttcctctcccaatgatgcatacatagttacaactgtcacgtttcgcctgaaacaaccctgaa |
10517408 |
T |
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