View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_low_5 (Length: 386)
Name: NF20227_low_5
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 37171667 - 37172026
Alignment:
| Q |
1 |
agaagattcgttgctttgtttcttttcttcttccctactcacatttttgaacactgccaaaatgcattatgaagtcaatattatactacacaaatagaaa |
100 |
Q |
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| T |
37171667 |
agaagattcgttgctttgtttcttttcttcttccctactcacatttttgaacactgccaaaatgcattatgaagtcaatattatactacacaaatagaaa |
37171766 |
T |
|
| Q |
101 |
ttcgtcaacgtagaaaaatgtaaaatgatggcagtatgtagttctcgttaatactatttaaaaactcaatgaaattaatatattgtgatagtttactccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37171767 |
ttcgtcaacgtagaaaaatgtaaaatgatggcagtatgtagttctcgttaatactatttaaaaactcaatgaaattaatatattgtgatagtttactccc |
37171866 |
T |
|
| Q |
201 |
tacctaaaccgaaagggtttagttacaactcatcatcgatctgtttaaagaggtataattaggtagtgtaccagtttttaacttgtttctgcctcaatgg |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37171867 |
tacctaaaccgaaagggtttagttaccactcatcatcgatctgtttaaagaggtatcattaggtagcgtaccagtttttaacttgtttctgcctcaatgg |
37171966 |
T |
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| Q |
301 |
agggaacaaacaaaaaacaggagtgaagtaacgtgcggacaatgaaatgtgtgtgtgggg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37171967 |
tgggaacaaacaaaaaacaggagtgaagtaacgtgcggacaatgaaatgtgtgtgtgggg |
37172026 |
T |
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