View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_low_6 (Length: 335)
Name: NF20227_low_6
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 47888860 - 47888547
Alignment:
| Q |
1 |
cagttgctccaaagttgactgcaatggattcaaggtaagaacaaaacatttgcgcctgatttgaaggttaacacagtttttaattattctgatccttgtt |
100 |
Q |
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| T |
47888860 |
cagttgctccaaagttgactgcaatggattcaaggtaagaacaaaacatttgcgcctgatttgaaggttaacacagtttttaattattctgatccttgtt |
47888761 |
T |
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| Q |
101 |
aaatccttggcaggttccctttggagcaccttcttggaaggaaaccagcttacaaagaaaacaaaagtgatacagaagaagatgaggacgacgacgacga |
200 |
Q |
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| T |
47888760 |
aaatccttgtcaggttccctttggagcaccttcttggaaggaaaccagcttacaaagaaaacaaaagtgatacagaagatgatgaggacgatgacgacga |
47888661 |
T |
|
| Q |
201 |
tgaggacgtacaagatgaggatgatgatggagaagaggaagactactcgggtgatgaaggcgaggaagaaggggatcccgaggatgatcctgaggctaac |
300 |
Q |
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| T |
47888660 |
tgatgacgtacaagatgaggatgatgatggagaagaggaagactactcgggtgatgaaggcgaggaagaaggggatcccgaggatgatcctgaggctaac |
47888561 |
T |
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| Q |
301 |
ggtgcaggaggaag |
314 |
Q |
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| T |
47888560 |
ggtgcaggaggaag |
47888547 |
T |
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