View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20227_low_9 (Length: 283)
Name: NF20227_low_9
Description: NF20227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20227_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 98 - 283
Target Start/End: Complemental strand, 43650417 - 43650230
Alignment:
| Q |
98 |
ttgtggcctatcttgaatttcattgatgtggctgttatggaattcaggtaatgtcctttatcacggacacagaacatt--gtcatttatcctagttagcc |
195 |
Q |
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| T |
43650417 |
ttgtggcctatcttgaatttcattgatgtggctgttatggaattcaggtaatgtcctttatcacggacacagaacattatgtcatttatcctagttagcc |
43650318 |
T |
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| Q |
196 |
tttggatatttatagcataattttagcttgcttttgttgttaatcatcaagacttaccgtcattgttttatgcagggtggagtttatt |
283 |
Q |
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| T |
43650317 |
tttggatatttatagcataattttagcttgcttttgtttttaatcatcaagacttaccgtcatttttttatgcagggtggagtttatt |
43650230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 43650475 - 43650414
Alignment:
| Q |
2 |
atctctattaaatttgggttcctatcactcgtagttaatgtgcaaagtcttagttatcttgt |
63 |
Q |
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| T |
43650475 |
atctctattaaatttgggttcctatcactcgtagttaatgtgcaaagtcttagttatcttgt |
43650414 |
T |
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